ArticleNature communications2024
Analyzes of pan-genome and resequencing atlas unveil the genetic basis of jujube domestication.
Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed.
- European ash pangenome reveals widespread structural variation and genetic basis of low ash dieback susceptibility.Nature communications · 2026Article
- Research Progress and Prospects of Molecular Marker Technology on Jujube Trees.Plants (Basel, Switzerland) · 2026Review
- QTL mapping of fruit sugar and acid traits in the FBMC plant biology · 2026Article
- The T2T genome assembly of Ziziphus jujuba 'Huizao' and pan-genome analyses provide insights into fruit texture diversity in jujube.Molecular horticulture · 2026Article
- The jujube pan-TE map identifies transposable element insertions associated with domestication and pericarp development.Horticulture research · 2026Article
- An integrated analysis of metabolomics and transcriptomics offers profound insights into the mechanisms of metabolic differentiation between Semen Ziziphi Spinosae and Semen Jujubae.BMC plant biology · 2026Article
- Comparative genomics of light harvesting chlorophyll a/b binding protein (LHC) family in green jujube (Ziziphus mauritiana) reveal the effect of domestication based on haplotype-resolved genome.BMC plant biology · 2026Article
- Effects of Slow-Release Fertilizer on Growth, Yield, and Quality ofPlants (Basel, Switzerland) · 2026Article
- Identification of genome size and heterozygosity in 510 Jujube (Frontiers in plant science · 2026Article
- Article
- Haplotype-resolved genome assembly of the leading cultivar of jujube (Ziziphus jujuba Mill. 'Huizao').Scientific data · 2025Article
- From fragmentation to resolution: high-fidelity genome assembly of zancudomyces culisetae through comparative insights from PacBio, Nanopore, and Illumina sequencing.G3 (Bethesda, Md.) · 2025Article
- A Novel ZjbZIP33-ZjPRX1 Module Positively Regulates Lignin Formation in the Jujube Fruit Stone.Plant biotechnology journal · 2025Article
- Construction of the super pan-genome for the genusHorticulture research · 2025Article
- Infection with Jujube Witches' Broom Phytoplasma Alters the Expression Pattern of theMicroorganisms · 2025Article
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18 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Jujube (Ziziphus jujuba Mill.), belonging to the Rhamnaceae family, is gaining increasing prominence as a perennial fruit crop with significant economic and medicinal values. Here, we conduct de novo assembly of four reference-grade genomes, encompassing one wild and three cultivated jujube accessions. We present insights into the population structure, genetic diversity, and genomic variations within a diverse collection of 1059 jujube accessions. Analyzes of the jujube pan-genome, based on our four assemblies and four previously released genomes, reveal extensive genomic variations within domestication-associated regions, potentially leading to the discovery of a candidate gene that regulates flowering and fruit ripening. By leveraging the pan-genome and a large-scale resequencing population, we identify two candidate genes involved in domestication traits, including the seed-setting rate, the bearing-shoot length and the leaf size in jujube. These genomic resources will accelerate evolutionary and functional genomics studies of jujube.
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