Evidence map›Paper›PMID 39472452›Full record

ArticleNature communications2024

Structural basis for the transmembrane signaling and antidepressant-induced activation of the receptor tyrosine kinase TrkB.

Erik F Kot, Sergey A Goncharuk, María Luisa Franco, Daniel M McKenzie, Alexander S Arseniev, Andrea Benito-Martínez, Mario Costa, Antonino Cattaneo, Kalina Hristova, Marçal Vilar and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. OrthogonalApplied and environmental microbiology · 2025
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Beyond the 5-HTThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Erik F Kot *Faculty of Biology, Shenzhen MSU-BIT University, Shenzhen, China.ORCID 0000-0003-4163-8273
Sergey A Goncharuk *Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia.ORCID 0000-0002-0263-6462
María Luisa Franco *Instituto de Biomedicina de Valencia-CSIC, València, Spain.
Daniel M McKenzieDepartment of Materials Science and Engineering and Institute for NanoBioTechnology, Johns Hopkins University, Baltimore, MD, USA.ORCID 0009-0002-3148-5971
Alexander S ArsenievShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia.
Andrea Benito-MartínezInstituto de Biomedicina de Valencia-CSIC, València, Spain.
Mario CostaScuola Normale Superiore Laboratory of Biology BIO@SNS, Pisa, Italy.
Antonino CattaneoScuola Normale Superiore Laboratory of Biology BIO@SNS, Pisa, Italy.ORCID 0000-0002-6975-8923
Kalina HristovaDepartment of Materials Science and Engineering and Institute for NanoBioTechnology, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0003-4274-4406
Marçal VilarInstituto de Biomedicina de Valencia-CSIC, València, Spain. mvilar@ibv.csic.es.ORCID 0000-0002-9376-6544
Konstantin S MineevShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia. konstantin.mineev@gmail.com.ORCID 0000-0002-2418-9421

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) CRC 1507Regional Government of Valencia | Conselleria d'Educació, Investigació, Cultura i Esport (Conselleria d'Educació, Investigació, Cultura i Esport de la Generalitat Valenciana) INVEST/2022/456Russian Science Foundation (RSF) 22-14-00130
6 · The paper itself

Abstract

Neurotrophin receptors of the Trk family are involved in the regulation of brain development and neuroplasticity, and therefore can serve as targets for anti-cancer and stroke-recovery drugs, antidepressants, and many others. The structures of Trk protein domains in various states upon activation need to be elucidated to allow rational drug design. However, little is known about the conformations of the transmembrane and juxtamembrane domains of Trk receptors. In the present study, we employ NMR spectroscopy to solve the structure of the TrkB dimeric transmembrane domain in the lipid environment. We verify the structure using mutagenesis and confirm that the conformation corresponds to the active state of the receptor. Subsequent study of TrkB interaction with the antidepressant drug fluoxetine, and the antipsychotic drug chlorpromazine, provides a clear self-consistent model, describing the mechanism by which fluoxetine activates the receptor by binding to its transmembrane domain.

Indexed as

Antidepressive AgentsFluoxetineReceptor, trkBSignal TransductionAnimalsCell MembraneHumansMembrane GlycoproteinsModels, MolecularProtein BindingProtein DomainsAntidepressive AgentsFluoxetineMembrane GlycoproteinsReceptor, trkBtropomyosin-related kinase-B, human

Identifiers

PMID39472452
PMCPMC11522581

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.