Evidence map›Paper›PMID 39472434›Full record

ArticleNature communications2024

Heterogeneous enhancer states orchestrate β cell responses to metabolic stress.

Liu Wang, Jie Wu, Madeline Sramek, S M Bukola Obayomi, Peidong Gao, Yan Li, Aleksey V Matveyenko, Zong Wei

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Association ofFrontiers in endocrinology · 2025
    Pooled it
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  5. Review
  6. Article
  7. Article
  8. Association of theFrontiers in medicine · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Liu Wang *Department of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine, Scottsdale, AZ, USA.ORCID 0000-0001-8252-0170
Jie Wu *Department of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine, Scottsdale, AZ, USA.ORCID 0009-0009-6534-5783
Madeline SramekDepartment of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine, Scottsdale, AZ, USA.
S M Bukola ObayomiDepartment of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine, Scottsdale, AZ, USA.ORCID 0000-0002-2563-5884
Peidong GaoDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH, USA.
Yan LiDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH, USA.ORCID 0000-0003-1910-6705
Aleksey V MatveyenkoDepartment of Physiology and Biomedical Engineering and Division of Endocrinology, Diabetes and Metabolism, Mayo Clinic College of Medicine, Rochester, MN, USA.ORCID 0000-0001-7761-4842
Zong WeiDepartment of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine, Scottsdale, AZ, USA. wei.zong@mayo.edu.ORCID 0000-0002-4691-0101

Funding

Mayo Clinic Center for Clinical and Translational Science (CCaTS UL1 Supplement - Dr. Timothy Curry)UL1TR002377 · NCATS · MAYO CLINIC ROCHESTER · PI VESNA D GAROVIC · 2017 to 2026
$78.4M
Role of Circadian Misalignment in Beta-cell Failure in Type 2 DiabetesR01DK098468 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ALEKSEY V MATVEYENKO · 2013 to 2026
$5.8M
Elucidating human beta cell transcriptional regulome with low-input genomic technologiesR01DK113185 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI Yan Li · 2018 to 2026
$4.0M
STAG2 mutations and 3D genome organization in glioblastoma multiformeR01CA267872 · NCI · GEORGETOWN UNIVERSITY · PI Fulai Jin, TODD A WALDMAN · 2022 to 2026
$2.7M
Understanding the variation of induced β-cell differentiation.R01DK131437 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI JIN, FULAI, LI, YAN · 2022 to 2025
$2.4M
Role of SIRT7 in the Pancreatic Beta CellsR01DK132651 · NIDDK · MAYO CLINIC ARIZONA · PI Zong Wei · 2022 to 2026
$2.1M
A role of chromatin remodeling complexes in beta cell dysfunctionK01DK120808 · NIDDK · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI WEI, ZONG · 2019 to 2021
$421k
NCATS NIH HHS UL1 TR002377NCI NIH HHS R01 CA267872NIDDK NIH HHS K01 DK120808NIDDK NIH HHS R01 DK098468NIDDK NIH HHS R01 DK113185NIDDK NIH HHS R01 DK131437NIDDK NIH HHS R01 DK132651
6 · The paper itself

Abstract

Obesity-induced β cell dysfunction contributes to the onset of type 2 diabetes. Nevertheless, elucidating epigenetic mechanisms underlying islet dysfunction at single cell level remains challenging. Here we profile single-nuclei RNA along with enhancer marks H3K4me1 or H3K27ac in islets from lean or obese mice. Our study identifies distinct gene signatures and enhancer states correlating with β cell dysfunction trajectory. Intriguingly, while many metabolic stress-induced genes exhibit concordant changes in both H3K4me1 and H3K27ac at their enhancers, expression changes of specific subsets are solely attributable to either H3K4me1 or H3K27ac dynamics. Remarkably, a subset of H3K4me1

Indexed as

Enhancer Elements, GeneticInsulin-Secreting CellsStress, PhysiologicalAnimalsCell CommunicationDiabetes Mellitus, Type 2Endoplasmic Reticulum StressEpigenesis, GeneticHepatocyte Nuclear Factor 3-betaHistonesMaleMiceMice, Inbred C57BLMice, ObeseNerve Growth FactorObesityFoxa2 protein, mouseHepatocyte Nuclear Factor 3-betaHistonesNerve Growth Factor

Identifiers

PMID39472434
PMCPMC11522703

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.