Evidence map›Paper›PMID 39472026›Full record

ReviewGenome research2024

The chromatin tapestry as a framework for neurodevelopment.

Ben Nolan, Timothy E Reznicek, Christopher T Cummings, M Jordan Rowley

Abstract readReview
In one paragraph

Review in Genome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ben NolanDepartment of Genetics, Cell Biology and Anatomy, Omaha, Nebraska 68198, USA.ORCID 0000-0002-6084-7647
Timothy E ReznicekDepartment of Genetics, Cell Biology and Anatomy, Omaha, Nebraska 68198, USA.ORCID 0009-0007-3630-2886
Christopher T CummingsDepartment of Pediatrics, University of Nebraska Medical Center, Omaha, Nebraska 68198, USA chris.cummings@unmc.edu jordan.rowley@unmc.edu.ORCID 0000-0002-2978-2494
M Jordan RowleyDepartment of Genetics, Cell Biology and Anatomy, Omaha, Nebraska 68198, USA; chris.cummings@unmc.edu jordan.rowley@unmc.edu.ORCID 0000-0002-5135-9596

Funding

Fine-Scale Genome Folding Relative to Transcription and LocationR35GM147467 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Michael Jordan Rowley · 2022 to 2026
$2.0M
NIGMS NIH HHS R35 GM147467
6 · The paper itself

Abstract

The neuronal nucleus houses a meticulously organized genome. Within this structure, genetic material is not simply compacted but arranged into a precise and functional 3D chromatin landscape essential for cellular regulation. This mini-review highlights the importance of this chromatin landscape in healthy neurodevelopment, as well as the diseases that occur with aberrant chromatin architecture. We discuss insights into the fundamental mechanistic relationship between histone modifications, DNA methylation, and genome organization. We then discuss findings that reveal how these epigenetic features change throughout normal neurodevelopment. Finally, we highlight single-gene neurodevelopmental disorders that illustrate the interdependence of epigenetic features, showing how disruptions in DNA methylation or genome architecture can ripple across the entire epigenome. As such, we emphasize the importance of measuring multiple chromatin architectural aspects, as the disruption of one mechanism can likely impact others in the intricate epigenetic network. This mini-review underscores the vast gaps in our understanding of chromatin structure in neurodevelopmental diseases and the substantial research needed to understand the interplay between chromatin features and neurodevelopment.

Indexed as

ChromatinDNA MethylationEpigenesis, GeneticNeurodevelopmental DisordersAnimalsChromatin Assembly and DisassemblyHistone CodeHistonesHumansNeuronsChromatinHistones

Identifiers

PMID39472026
PMCPMC11529992

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.