Evidence map›Paper›PMID 39471214›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Hyperspectral unmixing for Raman spectroscopy via physics-constrained autoencoders.

Dimitar Georgiev, Álvaro Fernández-Galiana, Simon Vilms Pedersen, Georgios Papadopoulos, Ruoxiao Xie, Molly M Stevens, Mauricio Barahona

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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  12. Hyperspectral unmixing for Raman spectroscopy via physics-constrained autoencoders.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dimitar GeorgievDepartment of Computing, Faculty of Engineering, Imperial College London, London SW7 2AZ, United Kingdom.ORCID 0000-0001-6114-5500
Álvaro Fernández-Galiana *Department of Materials, Faculty of Engineering, Imperial College London, London SW7 2AZ, United Kingdom.
Simon Vilms Pedersen *Department of Materials, Faculty of Engineering, Imperial College London, London SW7 2AZ, United Kingdom.ORCID 0000-0002-1830-370X
Georgios PapadopoulosDepartment of Computing, Faculty of Engineering, Imperial College London, London SW7 2AZ, United Kingdom.
Ruoxiao XieDepartment of Materials, Faculty of Engineering, Imperial College London, London SW7 2AZ, United Kingdom.
Molly M StevensDepartment of Materials, Faculty of Engineering, Imperial College London, London SW7 2AZ, United Kingdom.
Mauricio BarahonaDepartment of Mathematics, Faculty of Natural Sciences, Imperial College London, London SW7 2AZ, United Kingdom.ORCID 0000-0002-1089-5675

Funding

Bio Innovation Institute N/AIndependent Research Fund Denmark N/ARhodes Fellowship N/ARoyal Academy of Engineering (RAENG) CiET2021\94Schmidt Science Fellowship N/AUK Research and Innovation (UKRI) EP/S023283/1UKRI | Engineering and Physical Sciences Research Council (EPSRC) EP/N014529/1UKRI | Engineering and Physical Sciences Research Council (EPSRC) EP/P00114/1UKRI | Engineering and Physical Sciences Research Council (EPSRC) EP/T020792/1UKRI | Engineering and Physical Sciences Research Council (EPSRC) EP/T027258/1
6 · The paper itself

Abstract

Raman spectroscopy is widely used across scientific domains to characterize the chemical composition of samples in a nondestructive, label-free manner. Many applications entail the unmixing of signals from mixtures of molecular species to identify the individual components present and their proportions, yet conventional methods for chemometrics often struggle with complex mixture scenarios encountered in practice. Here, we develop hyperspectral unmixing algorithms based on autoencoder neural networks, and we systematically validate them using both synthetic and experimental benchmark datasets created in-house. Our results demonstrate that unmixing autoencoders provide improved accuracy, robustness, and efficiency compared to standard unmixing methods. We also showcase the applicability of autoencoders to complex biological settings by showing improved biochemical characterization of volumetric Raman imaging data from a monocytic cell.

Indexed as

autoencoderschemometricshyperspectral unmixingmachine learningRaman spectroscopy

Identifiers

PMID39471214
PMCPMC11551349

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.