Evidence map›Paper›PMID 39468422›Full record

ArticleArthritis & rheumatology (Hoboken, N.J.)2025

A Strong Dysregulated Myeloid Component in the Epigenetic Landscape of Systemic Sclerosis: An Integrated DNA Methylome and Transcriptome Analysis.

Javier Martínez-López, Lourdes Ortiz-Fernandez, Elkyn Estupiñán-Moreno, Martin Kerick, Eduardo Andrés-León, Laura C Terron-Camero, Elena Carnero-Montoro, Guillermo Barturen, Lorenzo Beretta, Isabel Almeida and 5 more

Abstract read
In one paragraph

Article in Arthritis & rheumatology (Hoboken, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Javier Martínez-LópezInstitute of Parasitology and Biomedicine López-Neyra, Consejo Superior de Investigaciones Científicas and Hospital Clínico San Cecilio, Instituto de Investigación Biosanitaria de Granada, Granada, Spain.ORCID 0000-0003-0184-9543
Lourdes Ortiz-FernandezInstitute of Parasitology and Biomedicine López-Neyra, Consejo Superior de Investigaciones Científicas, Granada, Spain.ORCID 0000-0002-0247-4280
Elkyn Estupiñán-MorenoJosep Carreras Research Institute, Barcelona, Spain.
Martin KerickInstitute of Parasitology and Biomedicine López-Neyra, Consejo Superior de Investigaciones Científicas, Granada, Spain.
Eduardo Andrés-LeónInstitute of Parasitology and Biomedicine López-Neyra, Consejo Superior de Investigaciones Científicas, Granada, Spain.
Laura C Terron-CameroInstitute of Parasitology and Biomedicine López-Neyra, Consejo Superior de Investigaciones Científicas, Granada, Spain.
Elena Carnero-MontoroCentre for Genomics and Oncological Research, Pfizer, University of Granada/Andalusian Regional Government, Granada, Spain.
Guillermo BarturenCentre for Genomics and Oncological Research, Pfizer, University of Granada/Andalusian Regional Government, Granada, Spain.ORCID 0000-0003-2103-1028
Lorenzo BerettaScleroderma Unit, Referral Center for Systemic Autoimmune Diseases, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico di Milano, Milan, Italy.ORCID 0000-0002-6529-6258
Isabel AlmeidaCentro Hospitalar Universitário do Porto and Instituto de Ciências Biomédicas Abel Salazar, Universidade do Porto, Porto, Portugal.
PRECISESADS Clinical Consortium
Marta E Alarcón-RiquelmeCentre for Genomics and Oncological Research, Pfizer, University of Granada/Andalusian Regional Government, Granada, Spain.
Esteban BallestarJosep Carreras Research Institute, Barcelona, Spain, and Health Science Center, East China Normal University, Shanghai, China.ORCID 0000-0002-1400-2440
Marialbert Acosta-HerreraInstitute of Parasitology and Biomedicine López-Neyra, Consejo Superior de Investigaciones Científicas and Hospital Clínico San Cecilio, Instituto de Investigación Biosanitaria de Granada, Granada, Spain.ORCID 0000-0002-9868-6535
Javier MartínInstitute of Parasitology and Biomedicine López-Neyra, Consejo Superior de Investigaciones Científicas, Granada, Spain.

Funding

Innovative Medicines Initiative Joint Undertaking 115565Instituto de Salud Carlos III (ISCIII) CP21/00132Instituto de Salud Carlos III (ISCIII) FI23/00231Ministerio de Ciencia, Innovación y Universidades RYC2022-036635-IRedes de Investigación Cooperativa Orientadas a Resultados en Salud (ISCIII) RD21/0002/0039
6 · The paper itself

Abstract

objectiveNongenetic factors influence systemic sclerosis (SSc) pathogenesis, underscoring epigenetics as a relevant contributor to the disease. We aimed to unravel DNA methylation abnormalities associated with SSc through an epigenome-wide association study.

methodsWe analyzed DNA methylation data from whole-blood samples in 179 patients with SSc and 241 unaffected individuals to identify differentially methylated positions (DMPs) with a false discovery rate (FDR) <0.05. These results were further integrated with RNA sequencing data from the same patients to assess their functional consequence. Additionally, we examined the impact of DNA methylation changes on transcription factors and analyzed the relationship between alterations of the methylation and gene expression profile and serum proteins levels.

resultsThis analysis yielded 525 DMPs enriched in immune-related pathways, with leukocyte cell-cell adhesion being the most significant (FDR = 4.91 × 10

conclusionOur findings uncover the impaired epigenetic regulation of the disease and its impact on gene expression, identifying new molecules for potential clinical applications and improving our understanding of SSc pathogenesis.

Indexed as

DNA MethylationEpigenesis, GeneticEpigenomeMyeloid CellsScleroderma, SystemicTranscriptomeAdultAgedFemaleGene Expression ProfilingHumansMaleMiddle Aged

Identifiers

PMID39468422
PMCPMC11936501

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.