Evidence map›Paper›PMID 39467874›Full record

ArticleDiabetologia2025

The Type 1 Diabetes T Cell Receptor and B Cell Receptor Repository in the AIRR Data Commons: a practical guide for access, use and contributions through the Type 1 Diabetes AIRR Consortium.

Stephanie J Hanna, Rachel H Bonami, Brian Corrie, Monica Westley, Amanda L Posgai, Eline T Luning Prak, Felix Breden, Aaron W Michels, Todd M Brusko, Type 1 Diabetes AIRR Consortium

Abstract read
In one paragraph

Article in Diabetologia, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Machine learning in AIRR diagnostics: Advances and applications.Immunoinformatics (Amsterdam, Netherlands) · 2025
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Stephanie J HannaDivision of Infection and Immunity, Cardiff University School of Medicine, Cardiff, UK. HannaSJ@cardiff.ac.uk.ORCID 0000-0002-0821-4498
Rachel H BonamiDepartment of Medicine, Division of Rheumatology and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA.ORCID 0000-0001-7575-6943
Brian CorrieDepartment of Biological Sciences, Simon Fraser University, Burnaby, BC, Canada.ORCID 0000-0003-3888-6495
Monica Westleythe(sugar)science, Redondo Beach, CA, USA.ORCID 0000-0002-2917-208X
Amanda L PosgaiDepartment of Pathology, Immunology, and Laboratory Medicine, College of Medicine, Diabetes Institute, University of Florida, Gainesville, FL, USA.ORCID 0000-0002-9491-0958
Eline T Luning PrakDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-9478-9211
Felix BredenDepartment of Biological Sciences, Simon Fraser University, Burnaby, BC, Canada.ORCID 0000-0001-9762-6314
Aaron W MichelsBarbara Davis Center for Diabetes, University of Colorado School of Medicine, Aurora, CO, USA. aaron.michels@cuanschutz.edu.ORCID 0000-0003-3766-5244
Todd M BruskoDepartment of Pathology, Immunology, and Laboratory Medicine, College of Medicine, Diabetes Institute, University of Florida, Gainesville, FL, USA. tbrusko@ufl.edu.ORCID 0000-0003-2878-9296
Type 1 Diabetes AIRR Consortium

Funding

Human Pancreas Analysis Program for Type 1 Diabetes - HPAP-T1DU01DK112217 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MARK A. ATKINSON, KLAUS H KAESTNER · 2021 to 2026
$46.8M
Project 3P01AI042288 · NIAID · UNIVERSITY OF FLORIDA · PI Todd Michael Brusko · 1997 to 2026
$32.9M
Multiple Autoantigens/Multiple Epitopes of Type 1DMR01DK032083 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI MICHELS, AARON W · 1986 to 2025
$6.9M
Molecular Dissection of Insulin Targeting in Anti-Islet AutoimmunityR01DK099317 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI AARON W MICHELS, Maki Nakayama · 2013 to 2026
$5.3M
i-AKC: Integrated AIRR Knowledge CommonsU24AI177622 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI LINDSAY G. COWELL · 2023 to 2026
$4.0M
Insulin Specific T Cell Response Shaped by Diabetes Protective MHC Class II MoleculesR01DK108868 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI AARON W MICHELS · 2017 to 2026
$3.6M
The Origins of Human Anti-Insulin B Lymphocytes in Type 1 DiabetesR01DK131070 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Rachel H Bonami · 2022 to 2026
$2.2M
Autoantigens targeted by CD8 T cells in type 1 diabetes: from islets to bloodR56DK099317 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI MICHELS, AARON W, NAKAYAMA, MAKI · 2019 to 2019
$194k
Diabetes Research and Wellness Foundation Professor David Matthews Non-Clinical Research FelLeona M. and Harry B. Helmsley Charitable Trust #2101-04969 #2301-06562NIAID NIH HHS P01 AI042288NIAID NIH HHS U24 AI177622NIDDK NIH HHS R01 DK032083NIDDK NIH HHS R01 DK099317NIDDK NIH HHS R01 DK108868NIDDK NIH HHS R01 DK131070NIDDK NIH HHS R56 DK099317NIDDK NIH HHS U01 DK112217NIH HHS DK108868NIH HHS DK131070 DK032083 DK099317NIH HHS P01 AI042288NIH HHS U01-DK112217NIH HHS U24 AI177622Steve Morgan Grand Chellenge/JDRF 2-SRA-2024-1473-M-NSteve Morgan Grand Chellenge/JDRF 2-SRA-2024-1474-M-N
6 · The paper itself

Abstract

Human molecular genetics has brought incredible insights into the variants that confer risk for the development of tissue-specific autoimmune diseases, including type 1 diabetes. The hallmark cell-mediated immune destruction that is characteristic of type 1 diabetes is closely linked with risk conferred by the HLA class II gene locus, in combination with a broad array of additional candidate genes influencing islet-resident beta cells within the pancreas, as well as function, phenotype and trafficking of immune cells to tissues. In addition to the well-studied germline SNP variants, there are critical contributions conferred by T cell receptor (TCR) and B cell receptor (BCR) genes that undergo somatic recombination to yield the Adaptive Immune Receptor Repertoire (AIRR) responsible for autoimmunity in type 1 diabetes. We therefore created the T1D TCR/BCR Repository (The Type 1 Diabetes T Cell Receptor and B Cell Receptor Repository) to study these highly variable and dynamic gene rearrangements. In addition to processed TCR and BCR sequences, the T1D TCR/BCR Repository includes detailed metadata (e.g. participant demographics, disease-associated parameters and tissue type). We introduce the Type 1 Diabetes AIRR Consortium goals and outline methods to use and deposit data to this comprehensive repository. Our ultimate goal is to facilitate research community access to rich, carefully annotated immune AIRR datasets to enable new scientific inquiry and insight into the natural history and pathogenesis of type 1 diabetes.

Indexed as

Diabetes Mellitus, Type 1Receptors, Antigen, B-CellReceptors, Antigen, T-CellAutoimmunityHumansReceptors, Antigen, B-CellReceptors, Antigen, T-CellAIRRAIRR Data CommonsAutoantibodiesB cell receptorsFAIR dataNext-generation sequencingSingle-cell RNA-seqT cell receptorsType 1 diabetes

Identifiers

PMID39467874
PMCPMC11663175

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.