Evidence map›Paper›PMID 39464144›Full record

ArticlebioRxiv : the preprint server for biology2024

Template switching during DNA replication is a prevalent source of adaptive gene amplification.

Julie N Chuong, Nadav Ben Nun, Ina Suresh, Julia Cano Matthews, Titir De, Grace Avecilla, Farah Abdul-Rahman, Nathan Brandt, Yoav Ram, David Gresham

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Julie N ChuongDepartment of Biology, Center for Genomics and Systems Biology, New York University.ORCID 0000-0002-4388-9458
Nadav Ben NunSchool of Zoology, Faculty of Life Sciences, Tel Aviv University.
Ina SureshDepartment of Biology, Center for Genomics and Systems Biology, New York University.
Julia Cano MatthewsDepartment of Biology, Center for Genomics and Systems Biology, New York University.
Titir DeDepartment of Biology, Center for Genomics and Systems Biology, New York University.
Grace AvecillaDepartment of Natural Sciences, Baruch College CUNY.
Farah Abdul-RahmanDepartment of Ecology and Evolutionary Biology, Yale University.
Nathan BrandtDepartment of Biological Sciences, North Carolina State University.
Yoav RamSchool of Zoology, Faculty of Life Sciences, Tel Aviv University.
David GreshamDepartment of Biology, Center for Genomics and Systems Biology, New York University.ORCID 0000-0002-4028-0364

Funding

Effects of obesity on the dynamics of Influenza transmissionR01AI140766 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI GRESHAM, DAVID, SCHULTZ-CHERRY, STACEY L · 2019 to 2023
$4.1M
Regulation of Quiescence in Eukaryotic CellsR01GM107466 · NIGMS · NEW YORK UNIVERSITY · PI GRESHAM, DAVID · 2013 to 2022
$3.0M
The Quantitative Biological Systems Training (QBIST) ProgramT32GM132037 · NIGMS · NEW YORK UNIVERSITY · PI David Gresham, Christine Vogel · 2019 to 2026
$2.3M
Regulated and evolutionary responses to nutritional stressR35GM153419 · NIGMS · NEW YORK UNIVERSITY · PI David Gresham · 2024 to 2026
$1.8M
Constraints and Consequences of Copy Number VariationR01GM134066 · NIGMS · NEW YORK UNIVERSITY · PI GRESHAM, DAVID · 2020 to 2023
$1.2M
NIAID NIH HHS R01 AI140766NIGMS NIH HHS R01 GM107466NIGMS NIH HHS R01 GM134066NIGMS NIH HHS R35 GM153419NIGMS NIH HHS T32 GM132037
6 · The paper itself

Abstract

Copy number variants (CNVs)-gains and losses of genomic sequences-are an important source of genetic variation underlying rapid adaptation and genome evolution. However, despite their central role in evolution little is known about the factors that contribute to the structure, size, formation rate, and fitness effects of adaptive CNVs. Local genomic sequences are likely to be an important determinant of these properties. Whereas it is known that point mutation rates vary with genomic location and local DNA sequence features, the role of genome architecture in the formation, selection, and the resulting evolutionary dynamics of CNVs is poorly understood. Previously, we have found that the

Identifiers

PMID39464144
PMCPMC11507740

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.