Evidence map›Paper›PMID 39464038›Full record

ArticlebioRxiv : the preprint server for biology2024

MicrobiomeKG: Bridging Microbiome Research and Host Health Through Knowledge Graphs.

Skye L Goetz, Amy K Glen, Gwênlyn Glusman

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Skye L GoetzInstitute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA.ORCID 0009-0007-8373-2352
Amy K GlenOregon State University, 1500 SW Jefferson Way, Corvallis, OR 97331.ORCID 0000-0003-3691-2290
Gwênlyn GlusmanInstitute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA.ORCID 0000-0001-8060-5955

Funding

Biomedical Data Translator Development of Autonomous Relay Agent: ARAXOT2TR003428 · NCATS · OREGON STATE UNIVERSITY · PI DEUTSCH, ERIC, KOSLICKI, DAVID · 2020 to 2024
$5.6M
Biomedical Data Translator Technical Feasibility Assessment and Architecture DesignOT3TR002026 · NCATS · INSTITUTE FOR SYSTEMS BIOLOGY · PI GLUSMAN, GWÊNLYN, HUANG, SUI · 2016 to 2019
$3.3M
DOCKET: accelerating knowledge extraction from biomedical data setsOT2TR003443 · NCATS · INSTITUTE FOR SYSTEMS BIOLOGY · PI GLUSMAN, GWÊNLYN, HADLOCK, JENNIFER · 2020 to 2024
$3.1M
NCATS NIH HHS OT2 TR003428NCATS NIH HHS OT2 TR003443NCATS NIH HHS OT3 TR002026
6 · The paper itself

Abstract

The microbiome represents a complex community of trillions of microorganisms residing in various body parts, and plays critical roles in maintaining host health and well-being. Understanding the interactions between microbiota and host offers valuable insights into potential strategies to promote health, including microbiome-targeted interventions. We have created MicrobiomeKG, a Knowledge Graph for microbiome research, bridging various taxa and microbial pathways with host health. This novel knowledge graph derives algorithmically-generated knowledge assertions from the supplemental tables supporting published microbiome papers, and is deployed for integrative analysis and hypothesis generation via the Biomedical Data Translator ecosystem.

Identifiers

PMID39464038
PMCPMC11507793

What OpenQuestion holds

Textmetadata
LicenceCC BY-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.