Evidence map›Paper›PMID 39463980›Full record

ArticlebioRxiv : the preprint server for biology2025

Carafe enables high quality

Bo Wen, Chris Hsu, David Shteynberg, Wen-Feng Zeng, Michael Riffle, Alexis Chang, Miranda Mudge, Brook L Nunn, Brendan X MacLean, Matthew D Berg and 3 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Bo WenDepartment of Genome Sciences, University of Washington.ORCID 0000-0003-2261-3150
Chris HsuDepartment of Genome Sciences, University of Washington.ORCID 0000-0002-0846-6126
David ShteynbergDepartment of Genome Sciences, University of Washington.
Wen-Feng ZengDepartment of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Germany.ORCID 0000-0003-4325-2147
Michael RiffleDepartment of Genome Sciences, University of Washington.ORCID 0000-0003-1633-8607
Alexis ChangDepartment of Genome Sciences, University of Washington.ORCID 0000-0002-0822-8136
Miranda MudgeDepartment of Genome Sciences, University of Washington.ORCID 0000-0003-3769-5937
Brook L NunnDepartment of Genome Sciences, University of Washington.ORCID 0000-0002-7361-4359
Brendan X MacLeanDepartment of Genome Sciences, University of Washington.
Matthew D BergDepartment of Genome Sciences, University of Washington.ORCID 0000-0002-7924-9241
Judit VillénDepartment of Genome Sciences, University of Washington.ORCID 0000-0002-1005-1739
Michael J MacCossDepartment of Genome Sciences, University of Washington.ORCID 0000-0003-1853-0256
William S NobleDepartment of Genome Sciences, University of Washington.ORCID 0000-0001-7283-4715

Funding

Project 4: Novel reagent development to enable molecular characterizationU19AG065156 · NIA · UNIVERSITY OF WASHINGTON · PI TIAN, LU · 2020 to 2024
$15.9M
Seattle Quant: A Resource for the Skyline Software EcosystemR24GM141156 · NIGMS · UNIVERSITY OF WASHINGTON · PI Michael MacCoss · 2021 to 2026
$6.7M
The role of phosphorylation in the cellular organization of the proteomeR35GM152061 · NIGMS · UNIVERSITY OF WASHINGTON · PI Judit Villen · 2024 to 2026
$1.3M
NIA NIH HHS U19 AG065156NIGMS NIH HHS R24 GM141156NIGMS NIH HHS R35 GM152061
6 · The paper itself

Abstract

Data-independent acquisition (DIA)-based mass spectrometry is becoming an increasingly popular mass spectrometry acquisition strategy for carrying out quantitative proteomics experiments. Most of the popular DIA search engines make use of

Identifiers

PMID39463980
PMCPMC11507862

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.