Evidence map›Paper›PMID 39463881›Full record

ArticleIEEE International Conference on Automation Science and Engineering (CASE) : [proceedings]. IEEE Conference on Automation Science and Engineering2022

Generating Counterfactual Explanations For Causal Inference in Breast Cancer Treatment Response.

Siqiong Zhou, Nicholaus Pfeiffer, Upala J Islam, Imon Banerjee, Bhavika K Patel, Ashif S Iquebal

Abstract read
In one paragraph

Article in IEEE International Conference on Automation Science and Engineering (CASE) : [proceedings]. IEEE Conference on Automation Science and Engineering, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. SCGAN: Sparse CounterGAN for Counterfactual Explanations in Breast Cancer Prediction.IEEE transactions on automation science and engineering : a publication of the IEEE Robotics and Automation Society · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Siqiong ZhouSchool of Computing and Augmented Intelligence, Arizona State University, Tempe, AZ 85281, USA.
Nicholaus PfeifferDepartment of Radiology, Mayo Clinic, Phoenix, AZ 85054, USA.
Upala J IslamSchool of Computing and Augmented Intelligence, Arizona State University, Tempe, AZ 85281, USA.
Imon BanerjeeSchool of Computing and Augmented Intelligence, Arizona State University, Tempe, AZ 85281, USA.
Bhavika K PatelDepartment of Radiology, Mayo Clinic, Phoenix, AZ 85054, USA.
Ashif S IquebalSchool of Computing and Augmented Intelligence, Arizona State University, Tempe, AZ 85281, USA.

Funding

Navigating Ethical Frontiers of AI-Driven Clinical Decision Support Systems: Exploring Explainability and BiasR21EB033923 · NIBIB · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI IQUEBAL, ASHIF · 2023 to 2024
$699k
NIBIB NIH HHS R21 EB033923
6 · The paper itself

Abstract

Imaging phenotypes extracted via radiomics of magnetic resonance imaging has shown great potential at predicting the treatment response in breast cancer patients after administering neoadjuvant systemic therapy (NST). Existing machine learning models are, however, limited in providing an expert-level interpretation of these models, particularly interpretability towards generating causal inference. Causal relationships between imaging phenotypes, clinical information, molecular features, and the treatment response may be useful in guiding the treatment strategies, management plans, and gaining acceptance in medical communities. In this work, we leverage the concept of counterfactual explanations to extract causal relationships between various imaging phenotypes, clinical information, molecular features, and the treatment response after NST. We implement the methodology on a publicly available breast cancer dataset and demonstrate the causal relationships generated from counterfactual explanations. We also compare and contrast our results with traditional explanations, such as LIME and Shapley.

Indexed as

counterfactual explanationsmachine learningmagnetic resonance imagingradiomics

Identifiers

PMID39463881
PMCPMC11513173

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.