Evidence map›Paper›PMID 39460313›Full record

ArticleVaccines2024

Network Analysis of Dysregulated Immune Response to COVID-19 mRNA Vaccination in Hemodialysis Patients.

Yi-Shin Chang, Jessica M Lee, Kai Huang, Christen L Vagts, Christian Ascoli, Russell Edafetanure-Ibeh, Yue Huang, Ruth A Cherian, Nandini Sarup, Samantha R Warpecha and 7 more

Abstract read
In one paragraph

Article in Vaccines, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Yi-Shin ChangDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Jessica M LeeDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.ORCID 0000-0002-4492-2221
Kai HuangDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.ORCID 0000-0003-2445-2696
Christen L VagtsDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Christian AscoliDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Russell Edafetanure-IbehDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Yue HuangDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Ruth A CherianDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Nandini SarupDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Samantha R WarpechaDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Sunghyun HwangDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Rhea GoelDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Benjamin A TurturiceDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Cody SchottDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Montserrat H MartinezDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.
Patricia W FinnDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.ORCID 0000-0001-6936-103X
David L PerkinsDepartment of Medicine, University of Illinois at Chicago, Chicago, IL 60612, USA.

Funding

Strengthening Stakeholder Engagement in Human Research Protections.UL1TR002003 · NCATS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KARNIK, NIRANJAN SUBHASH, MERMELSTEIN, ROBIN J. · 2016 to 2024
$33.7M
Precision Medicine in SarcoidosisR01HL138628 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI JACOBSON, JEFFREY R, PERKINS, DAVID LINN · 2018 to 2021
$3.6M
Postdoctoral Training Program in Pulmonary and Critical Care Translational ResearchT32HL144909 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI DUDEK, STEVEN M, FINN, PATRICIA W · 2019 to 2023
$1.3M
Immune Dysregulation in SarcoidosisF30HL151182 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI HUANG, KAI · 2020 to 2024
$260k
Influence of the perinatal microbiome on asthmatic phenotypes: associations with early life immune profilesF30HD102093 · NICHD · UNIVERSITY OF ILLINOIS AT CHICAGO · PI CHANG, YISHIN · 2020 to 2023
$197k
Perinatal Origins of AsthmaF30HL136001 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI TURTURICE, BENJAMIN · 2017 to 2020
$192k
NIH HHS F30HD102093NIH HHS F30HL127267NIH HHS F30HL136001NIH HHS F30HL151182NIH HHS R01-A1S1NIH HHS R01HL138628NIH HHS T32HL144909University of Illinois at Chicago Center for Clinical and Translational Science (CCTS) UL1TR002003
6 · The paper itself

Abstract

introductionEnd-stage renal disease (ESRD) results in immune dysfunction that is characterized by both systemic inflammation and immune incompetence, leading to impaired responses to vaccination.

methodsTo unravel the complex regulatory immune interplay in ESRD, we performed the network-based transcriptomic profiling of ESRD patients on maintenance hemodialysis (HD) and matched healthy controls (HCs) who received the two-dose regimen of the COVID-19 mRNA vaccine BNT162b2.

resultsCo-expression networks based on blood transcription modules (BTMs) of genes differentially expressed between the HD and HC groups revealed co-expression patterns that were highly similar between the two groups but weaker in magnitude in the HD compared to HC subjects. These networks also showed weakened coregulation between BTMs within the dendritic cell (DC) family as well as with other BTM families involved with innate immunity. The gene regulatory networks of the most enriched BTMs, likewise, highlighted weakened targeting by transcription factors of key genes implicated in DC, natural killer (NK) cell, and T cell activation and function. The computational deconvolution of immune cell populations further bolstered these findings with discrepant proportions of conventional DC subtypes, NK T cells, and CD8+ T cells in HD subjects relative to HCs.

conclusionAltogether, our results indicate that constitutive inflammation in ESRD compromises the activation of DCs and NK cells, and, ultimately, their mediation of downstream lymphocytes, leading to a delayed but intact immune response to mRNA vaccination.

Indexed as

end-stage renal diseaseepigeneticsgene regulatory networkhemodialysistranscriptomics

Identifiers

PMID39460313
PMCPMC11511558

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.