Evidence map›Paper›PMID 39460286›Full record

ArticleVaccines2024

Detection of PCV2d in Vaccinated Pigs in Colombia and Prediction of Vaccine T Cell Epitope Coverage against Circulating Strains Using EpiCC Analysis.

Diana S Vargas-Bermudez, Alixs Constanza Gil-Silva, María F Naranjo-Ortíz, José Darío Mogollón, Jair F Gómez-Betancur, José F Estrada, Álvaro Aldaz, Harold Garzón-González, José Angulo, Dennis Foss and 2 more

Abstract read
In one paragraph

Article in Vaccines, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Diana S Vargas-BermudezUniversidad Nacional de Colombia, Sede Bogotá, Facultad de Medicina Veterinaria y de Zootecnia, Centro de Investigación en Infectología e Inmunología Veterinaria (CI3V), Bogotá 111321, Colombia.ORCID 0000-0001-9201-1759
Alixs Constanza Gil-SilvaZoetis de Colombia, Titan Plaza Centro Empresarial, Bogotá 111021, Colombia.
María F Naranjo-OrtízUniversidad Nacional de Colombia, Sede Bogotá, Facultad de Medicina Veterinaria y de Zootecnia, Centro de Investigación en Infectología e Inmunología Veterinaria (CI3V), Bogotá 111321, Colombia.
José Darío MogollónUniversidad Nacional de Colombia, Sede Bogotá, Facultad de Medicina Veterinaria y de Zootecnia, Centro de Investigación en Infectología e Inmunología Veterinaria (CI3V), Bogotá 111321, Colombia.
Jair F Gómez-BetancurZoetis de Colombia, Titan Plaza Centro Empresarial, Bogotá 111021, Colombia.
José F EstradaZoetis de Colombia, Titan Plaza Centro Empresarial, Bogotá 111021, Colombia.
Álvaro AldazZoetis Inc., 10 Sylvan Way, Parsippany, NJ 07054, USA.
Harold Garzón-GonzálezGrupo de Investigación en Ciencias Biomédicas (GICBUPTC), Universidad Pedagógica y Tecnológica de Colombia (UPTC), Tunja 150003, BOY, Colombia.
José AnguloZoetis Inc., 1040 Swabia Ct, Durham, NC 27703, USA.
Dennis FossZoetis Inc., 333 Portage St, Kalamazoo, MI 49007, USA.ORCID 0000-0002-9208-5333
Andres H GutierrezEpiVax Inc., Providence, RI 02909, USA.ORCID 0000-0002-6127-8327
Jairo JaimeUniversidad Nacional de Colombia, Sede Bogotá, Facultad de Medicina Veterinaria y de Zootecnia, Centro de Investigación en Infectología e Inmunología Veterinaria (CI3V), Bogotá 111321, Colombia.ORCID 0000-0001-7697-5101

Funding

by Zoetis de Colombia and by the Facultad de Medicina Veterinaria y de Zootecnia, Universidad Nacional de Colombia, Sede Bogotá. Funding number Hermes 48508 - 2021
6 · The paper itself

Abstract

Porcine circovirus type 2 (PCV2) is strongly linked to a group of syndromes referred to as porcine-circovirus-associated diseases (PCVADs), which are controlled through vaccination; however, this does not induce sterilizing immunity but is instead involved in the evolution of the virus and is considered a factor in vaccine failure. This study sampled 84 herds (167 pigs) vaccinated against PCV2 and with clinical signs of PCVADs in five provinces across Colombia. PCV2 was identified and further characterized at the molecular level via genotyping and phylogenetic reconstructions. In addition, PCV2-associated lesions were examined via histopathology. Furthermore, the PCV2-Cap sequences retrieved were compared with three vaccines via the EpiCC tool and T cell epitope coverage. The prevalence of PCV2 was 82% in pigs and 92.9% in herds. The highest viral loads were identified in lymphoid tissue, and PCV2d emerged as the most predominant in pigs and herds (93.4% and 92.3%). Sequences for PCV2-ORF2 (

Indexed as

cell-mediated immunity (CMI)EpiCC analysisimmunoinformatic toolsPCV2dporcine-circovirus-associated diseases (PCVADs)porcine circovirus type 2 (PCV2)

Identifiers

PMID39460286
PMCPMC11511301

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.