Evidence map›Paper›PMID 39459892›Full record

ArticleViruses2024

Molecular Detection by Rolling Circle Amplification Combined with Deep Sequencing of Mixed Infection by Bovine Papillomaviruses 2 and 4 in Carcinoma In Situ of the Bovine Esophageal Mucosa.

Bruna F Matias, Michele Lunardi, Kátia C B Gonçalves, Laurival A Vilas-Boas, Emanuele Gustani-Buss, Ana Paula F R L Bracarense, Luiz Fernando C Cunha Filho, Alice F Alfieri, Amauri A Alfieri

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Bruna F MatiasLaboratory of Animal Virology, Department of Veterinary Preventive Medicine, Universidade Estadual de Londrina, Londrina 86057-970, Brazil.
Michele LunardiLaboratory of Animal Virology, Department of Veterinary Preventive Medicine, Universidade Estadual de Londrina, Londrina 86057-970, Brazil.ORCID 0000-0002-4763-0187
Kátia C B GonçalvesDepartment of General Biology, Universidade Estadual de Londrina, Londrina 86057-970, Brazil.
Laurival A Vilas-BoasDepartment of General Biology, Universidade Estadual de Londrina, Londrina 86057-970, Brazil.
Emanuele Gustani-BussDepartment of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven-University of Leuven, Box 1030, 3000 Leuven, Belgium.ORCID 0000-0003-4020-3921
Ana Paula F R L BracarenseLaboratory of Animal Pathology, Department of Veterinary Preventive Medicine, Universidade Estadual de Londrina, Londrina 86057-970, Brazil.ORCID 0000-0002-5407-2582
Luiz Fernando C Cunha FilhoPost Graduate Program in Animal Health and Production, Department of Agrarian Sciences, University Pitagoras Unopar, Arapongas 86702-670, Brazil.ORCID 0000-0003-1286-9101
Alice F AlfieriLaboratory of Animal Virology, Department of Veterinary Preventive Medicine, Universidade Estadual de Londrina, Londrina 86057-970, Brazil.
Amauri A AlfieriLaboratory of Animal Virology, Department of Veterinary Preventive Medicine, Universidade Estadual de Londrina, Londrina 86057-970, Brazil.ORCID 0000-0002-7024-4487

Funding

Coordenação de Aperfeicoamento de Pessoal de Nível SuperiorFinanciadora de Estudos e ProjetosInstitutos Nacionais de Ciência e Tecnologia 465725/2014-7National Council for Scientific and Technological Development
6 · The paper itself

Abstract

Papillomaviruses (PVs) are oncogenic and infect the skin and mucosa of various host species. Considering the recent advances in research on PVs using rolling circle amplification (RCA) followed by high-throughput sequencing (HTS), in this study, we aimed to investigate the bovine papillomavirus (BPV) types associated with proliferative lesions in the upper alimentary tract of an affected bull and characterize the viral strains through complete genome sequencing using this strategy. We analyzed the PV strains associated with two hyperplastic esophageal lesions through PCR using degenerate primer pairs and RCA, followed by HTS. HTS of the libraries generated using RCA products provided the whole genome sequence of BPV4 present in squamous papilloma, whereas the complete genome sequence of BPV2 and subgenomic fragments of BPV4 were identified in carcinoma in situ (CIS). For the first time, we have sequenced BPV2 identified from the CIS of the bovine upper alimentary canal. Additionally, RCA followed by HTS allowed characterization of the mixed infection by BPV2 and BPV4 in this lesion. These data reveal that BPV4 is not the only BPV type present in CIS of the esophageal mucous membrane; moreover, a mixed infection caused by BPV2 and BPV4 at the tested anatomical site was demonstrated.

Indexed as

Carcinoma in SituCattle DiseasesEsophageal MucosaGenome, ViralHigh-Throughput Nucleotide SequencingNucleic Acid Amplification TechniquesPapillomavirus InfectionsAnimalsCattleCoinfectionDNA, ViralEsophageal NeoplasmsMalePapillomaviridaePhylogenyDNA, Viralcattlecoinfectionesophagushistopathologynext generation sequencingpapillomapolymerase chain reactionupper alimentary tract

Identifiers

PMID39459892
PMCPMC11512380

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.