Evidence map›Paper›PMID 39457434›Full record

Observational studyGenes2024

Whole Exome Sequencing and Panel-Based Analysis in 176 Spanish Children with Neurodevelopmental Disorders: Focus on Autism Spectrum Disorder and/or Intellectual Disability/Global Developmental Delay.

Ariadna Sánchez Suárez, Beatriz Martínez Menéndez, Eduardo Escolar Escamilla, Francisco J Martínez Sarries, Miren Iranzu Esparza Garrido, Belén Gil-Fournier, Soraya Ramiro León, Bárbara Rubio Gribble, Juan F Quesada Espinosa, Andrés J Alcaraz Romero

Abstract readObservational Study
In one paragraph

Observational study in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Identification of Novel Co-OccurringThe application of clinical genetics · 2026
    Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ariadna Sánchez SuárezEscuela Internacional de Doctorado, Rey Juan Carlos University, Alcorcón Campus, 28922 Madrid, Spain.
Beatriz Martínez MenéndezFaculty of Biomedical and Health Sciences, Universidad Europea de Madrid, Villaviciosa de Odón, 28670 Madrid, Spain.ORCID 0000-0002-2966-2599
Eduardo Escolar EscamillaFaculty of Biomedical and Health Sciences, Universidad Europea de Madrid, Villaviciosa de Odón, 28670 Madrid, Spain.
Francisco J Martínez SarriesNeurology Department, Getafe University Hospital, 28905 Madrid, Spain.
Miren Iranzu Esparza GarridoPediatrics Department, Getafe University Hospital, 28905 Madrid, Spain.
Belén Gil-FournierGenetics Department, Getafe University Hospital, 28905 Madrid, Spain.
Soraya Ramiro LeónGenetics Department, Getafe University Hospital, 28905 Madrid, Spain.
Bárbara Rubio GribbleFaculty of Biomedical and Health Sciences, Universidad Europea de Madrid, Villaviciosa de Odón, 28670 Madrid, Spain.ORCID 0009-0002-0876-370X
Juan F Quesada EspinosaGenetics Department, 12 de Octubre University Hospital, 28041 Madrid, Spain.ORCID 0000-0002-4420-5214
Andrés J Alcaraz RomeroFaculty of Biomedical and Health Sciences, Universidad Europea de Madrid, Villaviciosa de Odón, 28670 Madrid, Spain.ORCID 0000-0003-3554-0253

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNeurodevelopmental disorders (NDDs) represent a significant challenge in pediatric genetics, often requiring advanced diagnostic tools for the accurate identification of genetic variants.

objectivesTo determine the diagnostic yield of whole exome sequencing (WES) with targeted gene panels in children with neurodevelopmental disorders (NDDs).

methodsThis observational, prospective study included a total of 176 Spanish-speaking pediatric patients with neurodevelopmental disorders (NDDs), encompassing intellectual disability (ID), global developmental delay (GDD), and/or autism spectrum disorder (ASD). Participants were recruited from January 2019 to January 2023 at a University Hospital in Madrid, Spain. Clinical and sociodemographic variables were recorded, along with genetic study results. The age range of the subjects was 9 months to 16 years, and the percentage of males was 72.1%. The diagnostic yield of whole exome sequencing (WES) was calculated both before and after parental testing via Sanger DNA sequencing.

resultsThe study included 176 children: 67 (38.1%) with ID, 62 (35.2%) with ASD, and 47 (26.7%) with ASD + ID. The diagnostic yield of proband-only exome sequencing was 12.5% (22/176). By group, the diagnostic yield of proband-only exome sequencing was 3.2% in the ASD, 12.7% in the ASD + ID, and 20.8% in the ID group. Variants of uncertain significance (VUS) were found in 39.8% (70/176). After parental testing, some variants were reclassified as "likely pathogenic", increasing the diagnostic yield by 4.6%, with an overall diagnostic yield of 17.1%. Diagnostic yield was higher in patients with syndromic ID (70.6%% vs. 29.4%;

conclusionsA sequential approach utilizing WES followed by panel-based analysis, starting with the index case and, when appropriate, including the parents, proves to be a cost-effective strategy. WES is particularly suitable for complex conditions, as it allows for the identification of potentially causative genes beyond those covered by targeted panels, providing a more comprehensive analysis. Including parental testing enhances the diagnostic yield and improves accuracy, especially in cases with variants of uncertain significance (VUS), thereby advancing our understanding of NDDs.

Indexed as

Autism Spectrum DisorderDevelopmental DisabilitiesExome SequencingIntellectual DisabilityNeurodevelopmental DisordersAdolescentChildChild, PreschoolFemaleGenetic TestingHumansInfantMaleProspective StudiesSpainautism spectrum disorderdiagnostic yieldintellectual disabilityneurodevelopmental disordersvariants of uncertain significancewhole exome sequencing

Identifiers

PMID39457434
PMCPMC11508026

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.