Evidence map›Paper›PMID 39457034›Full record

ArticleInternational journal of molecular sciences2024

In Silico Discovery of a Novel PI3Kδ Inhibitor Incorporating 3,5,7-Trihydroxychroman-4-one Targeting Diffuse Large B-Cell Lymphoma.

Wenqing Jia, Jingdian Liu, Xianchao Cheng, Xingguo Li, Yukui Ma

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Wenqing JiaCollege of Chemistry and Chemical Engineering, Qilu Normal University, Jinan 250200, China.
Jingdian LiuCollege of Chemistry and Chemical Engineering, Qilu Normal University, Jinan 250200, China.
Xianchao ChengTianjin Key Laboratory on Technologies Enabling Development of Clinical Therapeutics and Diagnostics (Theranostics), School of Pharmacy, Tianjin Medical University, Tianjin 300070, China.
Xingguo LiKey Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, National-Local Joint Engineering Research Center for Development and Utilization of Small Fruits in Cold Regions, College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China.
Yukui MaCollege of Chemistry and Chemical Engineering, Qilu Normal University, Jinan 250200, China.

Funding

Scientific Research Program of Tianjin Municipal Education Commission 2020KJ186
6 · The paper itself

Abstract

Diffuse large B-cell lymphoma (DLBCL) is the most common lymphoma, and it is highly aggressive and heterogeneous. Targeted therapy is still the main treatment method used in clinic due to its lower risk of side effects and personalized medication. Excessive activation of PI3Kδ in DLBCL leads to abnormal activation of the PI3K/Akt pathway, promoting the occurrence and development of DLBCL. The side effects of existing PI3Kδ inhibitors limit their clinical application. The discovery of PI3Kδ inhibitors with novel structures and minimal side effects is urgently needed. This study constructed a PI3Kδ inhibitor screening model to screen natural product libraries. Revealing the mechanism of natural product therapy for DLBCL through network pharmacology, kinase assays, and molecular dynamics. The results of molecular docking indicated that Silibinin had a high docking score and a good binding mode with PI3Kδ. The results of network pharmacology indicated that Silibinin could exert therapeutic effects on DLBCL by inhibiting PI3Kδ activity and affecting the PI3K/Akt pathway. The kinase assays indicated that Silibinin concentration dependently inhibited the activity of PI3Kδ. The results of molecular dynamics indicated that Silibinin could stably bind to PI3Kδ. Silibinin was a structurally novel 3,5,7-trihydroxychroman-4-one PI3Kδ inhibitor, providing valuable information for the subsequent discovery of PI3Kδ inhibitors.

Indexed as

Class I Phosphatidylinositol 3-KinasesLymphoma, Large B-Cell, DiffuseMolecular Docking SimulationMolecular Dynamics SimulationPhosphoinositide-3 Kinase InhibitorsAntineoplastic AgentsChromonesComputer SimulationDrug DiscoveryHumansProtein Kinase InhibitorsProto-Oncogene Proteins c-aktSignal TransductionAntineoplastic AgentsChromonesClass I Phosphatidylinositol 3-KinasesPhosphoinositide-3 Kinase InhibitorsPIK3CD protein, humanProtein Kinase InhibitorsProto-Oncogene Proteins c-aktDLBCLmolecular dynamicsnetwork pharmacologyPI3Kδvirtual screening

Identifiers

PMID39457034
PMCPMC11508633

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.