Evidence map›Paper›PMID 39456931›Full record

ArticleInternational journal of molecular sciences2024

Transcriptomic Analysis During Olive Fruit Development and Expression Profiling of Fatty Acid Desaturase Genes.

Alicia Serrano, Judith García-Martín, Martín Moret, José Manuel Martínez-Rivas, Francisco Luque

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alicia SerranoThe University Institute of Research in Olive Grove and Olive Oils (INUO), University of Jaén, 23071 Jaén, Spain.ORCID 0000-0002-6936-3913
Judith García-MartínThe University Institute of Research in Olive Grove and Olive Oils (INUO), University of Jaén, 23071 Jaén, Spain.ORCID 0009-0007-7675-7316
Martín MoretThe University Institute of Research in Olive Grove and Olive Oils (INUO), University of Jaén, 23071 Jaén, Spain.ORCID 0000-0002-7809-9800
José Manuel Martínez-RivasInstituto de la Grasa, CSIC (Consejo Superior de Investigaciones Científicas), 41013 Seville, Spain.ORCID 0000-0003-4298-1014
Francisco LuqueThe University Institute of Research in Olive Grove and Olive Oils (INUO), University of Jaén, 23071 Jaén, Spain.ORCID 0000-0003-1354-3533

Funding

Ministerio de Ciencia, Innovación y Universidades PID2020-115853RR-C33
6 · The paper itself

Abstract

The olive fruit is a drupe whose development and ripening takes several months from flowering to full maturation. During this period, several biochemical and physiological changes occur that affect the skin color, texture, composition, and size of the mesocarp. The final result is a fruit rich in fatty acids, phenolic compounds, tocopherols, pigments, sterols, terpenoids, and other compounds of nutritional interest. In this work, a transcriptomic analysis was performed using flowers (T0) and mesocarp tissue at seven different stages during olive fruit development and ripening (T1-T7) of the 'Picual' cultivar. A total of 1755 genes overexpressed at any time with respect to the flowering stage were further analyzed. These genes were grouped into eight clusters based on their expression profile. The gene enrichment analysis revealed the most relevant biological process of every cluster. Highlighting the important role of hormones at very early stages of fruit development (T1, Cluster 1), whereas genes involved in fatty acid biosynthesis were relevant throughout the fruit developmental process. Hence, genes coding for different fatty acid desaturase (SAD, FAD2, FAD3, FAD4, FAD5, FAD6, and FAD7) enzymes received special attention. In particular, 26 genes coding for different fatty acid desaturase enzymes were identified in the 'Picual' genome, contributing to the improvement of the genome annotation. The expression pattern of these genes during fruit development corroborated their role in determining fatty acid composition.

Indexed as

Fatty Acid DesaturasesFruitGene Expression Regulation, PlantOleaPlant ProteinsFatty AcidsGene Expression ProfilingTranscriptomeFatty Acid DesaturasesFatty AcidsPlant Proteinsfatty acid desaturaseOlea europaea L.olive fruitripening processRNAseq

Identifiers

PMID39456931
PMCPMC11508905

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.