Evidence map›Paper›PMID 39456784›Full record

ArticleInternational journal of molecular sciences2024

Identification of Phospholipids Relevant to Cancer Tissue Using Differential Ion Mobility Spectrometry.

Patrik Sioris, Meri Mäkelä, Anton Kontunen, Markus Karjalainen, Antti Vehkaoja, Niku Oksala, Antti Roine

Registry-linked trialAbstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT07781215 (Stool Profile in Evaluating Colitis Treatment Response, Outcome and Severity), which is not on this map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT07781215 not yet recruitingnot on this mapstarted 2026, after this paper: background citation

Stool Profile in Evaluating Colitis Treatment Response, Outcome and Severity

Typeobservational_patient_registrySponsorTampere University HospitalRan2026 to 2036Enrolled120ConditionsIBD (Inflammatory Bowel Disease)ArmsDifferential Mobile Spectrometry analysis of the stool
3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Lipidomic profile of meningiomas harboring different NF2 mutation status.Metabolomics : Official journal of the Metabolomic Society · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Patrik SiorisFaculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland.ORCID 0000-0002-1140-978X
Meri MäkeläTAYS Cancer Centre, Tampere University Hospital, Wellbeing Services County of Pirkanmaa, 33521 Tampere, Finland.
Anton KontunenTAYS Cancer Centre, Tampere University Hospital, Wellbeing Services County of Pirkanmaa, 33521 Tampere, Finland.ORCID 0000-0002-2220-1351
Markus KarjalainenTAYS Cancer Centre, Tampere University Hospital, Wellbeing Services County of Pirkanmaa, 33521 Tampere, Finland.
Antti VehkaojaFaculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland.ORCID 0000-0003-3721-3467
Niku OksalaFaculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland.ORCID 0000-0001-5336-3719
Antti RoineFaculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland.ORCID 0000-0002-1811-2671

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phospholipids are the main building components of cell membranes and are also used for cell signaling and as energy storages. Cancer cells alter their lipid metabolism, which ultimately leads to an increase in phospholipids in cancer tissue. Surgical energy instruments use electrical or vibrational energy to heat tissues, which causes intra- and extracellular water to expand rapidly and degrade cell structures, bursting the cells, which causes the formation of a tissue aerosol or smoke depending on the amount of energy used. This gas phase analyte can then be analyzed via gas analysis methods. Differential mobility spectrometry (DMS) is a method that can be used to differentiate malignant tissue from benign tissues in real time via the analysis of surgical smoke produced by energy instruments. Previously, the DMS identification of cancer tissue was based on a 'black box method' by differentiating the 2D dispersion plots of samples. This study sets out to find datapoints from the DMS dispersion plots that represent relevant target molecules. We studied the ability of DMS to differentiate three subclasses of phospholipids (phosphatidylcholine, phosphatidylinositol, and phosphatidylethanolamine) from a control sample using a bovine skeletal muscle matrix with a 5 mg addition of each phospholipid subclass to the sample matrix. We trained binary classifiers using linear discriminant analysis (LDA) and support vector machines (SVM) for sample classification. We were able to identify phosphatidylcholine, -inositol, and -ethanolamine with SVM binary classification accuracies of 91%, 73%, and 66% and with LDA binary classification accuracies of 82%, 74%, and 72%, respectively. Phosphatidylcholine was detected with a reliable classification accuracy, but ion separation setups should be adjusted in future studies to reliably detect other relevant phospholipids such as phosphatidylinositol and phosphatidylethanolamine and improve DMS as a microanalysis method and identify other phospholipids relevant to cancer tissue.

Indexed as

Ion Mobility SpectrometryNeoplasmsPhospholipidsAnimalsCattleDiscriminant AnalysisHumansMuscle, SkeletalPhosphatidylethanolaminesSupport Vector MachinePhosphatidylethanolaminesPhospholipidscancerdifferential mobility spectrometryfield asymmetric ion mobility spectrometryphospholipid

Identifiers

PMID39456784
PMCPMC11508011

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.