Evidence map›Paper›PMID 39456662›Full record

ArticleInternational journal of molecular sciences2024

Phylogenetic Analysis of Porcine Epidemic Diarrhea Virus (PEDV) during 2020-2022 and Isolation of a Variant Recombinant PEDV Strain.

Qianling Peng, Ping Fu, Yutong Zhou, Yifei Lang, Shan Zhao, Yiping Wen, Yiping Wang, Rui Wu, Qin Zhao, Senyan Du and 3 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Qianling PengSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.
Ping FuSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.
Yutong ZhouSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.
Yifei LangSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.
Shan ZhaoSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.
Yiping WenSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.
Yiping WangSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.
Rui WuSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.
Qin ZhaoSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.ORCID 0000-0003-3184-2932
Senyan DuSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.
Sanjie CaoSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.ORCID 0000-0003-2931-0865
Xiaobo HuangSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.
Qigui YanSwine Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611130, China.

Funding

Undergraduate Training Programs for Innovation and Entrepreneurship S202310626073
6 · The paper itself

Abstract

Porcine epidemic diarrhea (PED) is an acute, highly contagious, and infectious disease caused by porcine epidemic diarrhea virus (PEDV). PEDV can affect pigs of all ages, with 50~100% mortality in neonatal piglets and substantial economic losses in the swine industry. In the present study, 347 fecal and intestinal samples were collected from seven regions in China during 2020-2022. A comprehensive molecular investigation of the spike (S) gene of PEDV strains was carried out, which included phylogenetic analysis of the obtained PEDV sequences. Epidemiological surveillance data indicate that the GIIc subgroup strains are widely distributed among pigs. A PEDV strain was successfully isolated from positive small intestine samples and identified through RT-PCR detection using specific N gene primers of PEDV, indirect immunofluorescence assay (IFA), TEM analysis, genome sequencing, and full-length S gene analysis, named PEDV/SC/2022. RDP and SimPlot analysis showed that the isolate originated from the recombination of PEDV/AH2012 and PEDV/AJ1102. In conclusion, our findings contribute to the current understanding of PEDV epidemiology and provide valuable information for the control of PED outbreaks in China.

Indexed as

Coronavirus InfectionsPhylogenyPorcine epidemic diarrhea virusSwine DiseasesAnimalsChinaFecesRecombination, GeneticSpike Glycoprotein, CoronavirusSwineSpike Glycoprotein, CoronavirusPEDVphylogenyrecombinationvariantvirus isolation

Identifiers

PMID39456662
PMCPMC11507624

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.