Evidence map›Paper›PMID 39456136›Full record

ArticleBiomolecules2024

Insights into VDAC Gating: Room-Temperature X-ray Crystal Structure of mVDAC-1.

Kristofer R Gonzalez-DeWhitt, Natalia Ermolova, Harrison K Wang, Doeke R Hekstra, Thorsten Althoff, Jeff Abramson

Abstract read
In one paragraph

Article in Biomolecules, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Elliptical β-barrel deformation underlies gating in VDAC1.Protein science : a publication of the Protein Society · 2026
    Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kristofer R Gonzalez-DeWhittDepartment of Physiology, School of Medicine, University of California, Los Angeles, CA 90095, USA.
Natalia ErmolovaDepartment of Physiology, School of Medicine, University of California, Los Angeles, CA 90095, USA.
Harrison K WangDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0003-4275-9472
Doeke R HekstraDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.
Thorsten AlthoffDepartment of Physiology, School of Medicine, University of California, Los Angeles, CA 90095, USA.ORCID 0000-0001-5688-5328
Jeff AbramsonDepartment of Physiology, School of Medicine, University of California, Los Angeles, CA 90095, USA.

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI STEVEN E EALICK · 2018 to 2026
$34.2M
UCLA-Caltech Medical Scientist Training ProgramT32GM008042 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AJIJOLA, OLUJIMI A, DAWSON, DAVID WAYNE · 1985 to 2023
$29.9M
User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008313 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MURTHY, VENKATESH N · 1989 to 2023
$14.6M
Deciphering molecular details of cellular sugar transport and their roles in diseaseR35GM135175 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ABRAMSON, JEFFREY S · 2020 to 2024
$3.9M
Identifying Principles of Protein Mechanics by Applying Force and Observing MotionDP2GM141000 · NIGMS · HARVARD UNIVERSITY · PI HEKSTRA, DOEKE ROMKE · 2020 to 2020
$2.4M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Structural investigation of a type III polyketide synthase involved in cannabinoid biosynthesisF30AT011858 · NCCIH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GONZALEZ-DEWHITT, KRISTOFER R. · 2022 to 2023
$84k
NCCIH NIH HHS F30 AT011858NIGMS NIH HHS DP2 GM141000NIGMS NIH HHS P30 GM124165NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R35 GM135175NIGMS NIH HHS T32 GM008042NIGMS NIH HHS T32 GM008313NIH HHS R35GM135175NIH HHS S10 OD021527
6 · The paper itself

Abstract

The voltage-dependent anion channel (VDAC) is a crucial mitochondrial protein that facilitates ion and metabolite exchange between mitochondria and the cytosol. Initially characterized over three decades ago, the structure of VDAC-1 was resolved in 2008, revealing a novel β-barrel protein architecture. This study presents the first room-temperature crystal structure of mouse VDAC-1 (mVDAC-1), which is a significant step toward understanding the channel's gating mechanism. The new structure, obtained at a 3.3 Å resolution, demonstrates notable differences from the previously determined cryogenic structure, particularly in the loop regions, which may be critical for the transition between the 'open' and 'closed' states of VDAC-1. Comparative analysis of the root-mean-square deviation (R.M.S.D.) and B-factors between the cryogenic and room-temperature structures suggests that these conformational differences, although subtle, are important for VDAC's functional transitions. The application of electric field-stimulated X-ray crystallography (EF-X) is proposed as a future direction to resolve the 'closed' state of VDAC-1 by inducing voltage-driven conformational changes in order to elucidate the dynamic gating mechanism of VDAC-1. Our findings have profound implications for understanding the molecular basis of VDAC's role in mitochondrial function and its regulation under physiological conditions.

Indexed as

TemperatureVoltage-Dependent Anion Channel 1AnimalsCrystallography, X-RayIon Channel GatingMiceModels, MolecularProtein ConformationVdac1 protein, mouseVoltage-Dependent Anion Channel 1electric field-stimulated X-ray crystallography (EF-X)mitochondrial biologyroom-temperature crystallographyvoltage-dependent anion channel (VDAC)

Identifiers

PMID39456136
PMCPMC11505624

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.