Evidence map›Paper›PMID 39455682›Full record

ArticleScientific reports2024

HNCDrugResDb: a platform for deciphering drug resistance in head and neck cancers.

Akhina Palollathil, Revathy Nandakumar, Mukhtar Ahmed, Anoop Kumar G Velikkakath, Mahammad Nisar, Muhammad Nisar, Rex Devasahayam Arokia Balaya, Sakshi Sanjay Parate, Vidyarashmi Hanehalli, Althaf Mahin and 7 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Akhina PalollathilCenter for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India.ORCID 0000-0002-0322-2448
Revathy NandakumarCenter for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India.ORCID 0000-0003-2429-4501
Mukhtar AhmedDepartment of Zoology, College of Science, King Saud University, Kingdom of Saudi Arabia, P.O. Box 2455, Riyadh, 11451, Saudi Arabia.ORCID 0000-0001-7392-6312
Anoop Kumar G VelikkakathCenter for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India. anoopkumar@yenepoya.edu.in.ORCID 0000-0002-3863-918X
Mahammad NisarCentre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India.ORCID 0000-0002-5223-2802
Muhammad NisarCentre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India.ORCID 0009-0009-1185-9121
Rex Devasahayam Arokia BalayaCentre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India.ORCID 0000-0002-9556-3150
Sakshi Sanjay ParateCenter for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India.ORCID 0000-0001-8604-6525
Vidyarashmi HanehalliSchool of Biology, Indian Institute of Science Education and Research, Thiruvananthapuram, Kerala, 695551, India.ORCID 0009-0003-1727-2969
Althaf MahinCenter for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India.ORCID 0009-0007-6017-4415
Rohan Thomas MathewDepartment of Surgical Oncology, Yenepoya Medical College, Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India.ORCID 0000-0002-0222-5831
Rohan ShettyDepartment of Surgical Oncology, Yenepoya Medical College, Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India.ORCID 0000-0002-3616-5363
Jalaluddin Akbar Kandel CodiDepartment of Surgical Oncology, Yenepoya Medical College, Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India.ORCID 0000-0002-2490-3488
Amjesh RevikumarCentre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India.ORCID 0000-0003-0036-6582
Manavalan VijayakumarDepartment of Surgical Oncology, Yenepoya Medical College, Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India. mvijai2013@gmail.com.ORCID 0000-0002-0711-1737
Thottethodi Subrahmanya Keshava PrasadCenter for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India. keshav@yenepoya.edu.in.ORCID 0000-0002-6206-2384
Rajesh RajuCenter for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India. rajrrnbt@gmail.com.ORCID 0000-0003-2319-121X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Drug resistance poses a significant obstacle to the success of anti-cancer therapy in head and neck cancers (HNCs). We aim to develop a platform for visualizing and analyzing molecular expression alterations associated with HNC drug resistance. Through data mining, we convened differentially expressed molecules and context-specific signaling events involved in drug resistance. The driver genes, interaction networks and transcriptional regulations were explored using bioinformatics approaches. A total of 2364 differentially expressed molecules were identified in 78 distinct drug-resistant cells against 14 anti-cancer drugs, comprising 1131 mRNAs, 746 proteins, 62 lncRNAs, 257 miRNAs, 1 circRNA, and 166 post-translational modifications. Among these, 255 molecules were considerably, the signature driver genes of HNC drug resistance. Further, we also developed a landscape of signaling pathways and their cross-talk with diverse signaling modules involved in drug resistance. Additionally, a publicly-accessible database named "HNCDrugResDb" was designed with browse, query, and pathway explorer options to fetch and enrich molecular alterations and signaling pathways altered in drug resistance. HNCDrugResDb is also enabled with a Drug Resistance Analysis tool as an initial platform to infer the likelihood of resistance based on the expression pattern of driver genes. HNCDrugResDb is anticipated to have substantial implications for future advancements in drug discovery and optimization of personalized medicine approaches.

Indexed as

Drug Resistance, NeoplasmGene Expression Regulation, NeoplasticHead and Neck NeoplasmsAntineoplastic AgentsComputational BiologyDatabases, GeneticData MiningGene Expression ProfilingGene Regulatory NetworksHumansMicroRNAsSignal TransductionAntineoplastic AgentsMicroRNAsChemotherapyDrug resistanceHead and neck cancerSignaling pathwayTranscriptional reprogramming

Identifiers

PMID39455682
PMCPMC11511878

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.