Evidence map›Paper›PMID 39454005›Full record

ArticleScience advances2024

Temporal regulation of gene expression through integration of p53 dynamics and modifications.

Dan Lu, Marjan Faizi, Bryon Drown, Alina Simerzin, Joshua François, Gary Bradshaw, Neil Kelleher, Ashwini Jambhekar, Jeremy Gunawardena, Galit Lahav

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. p53motifDB: integration of genomic information and tumour suppressor p53 binding motifs.Database : the journal of biological databases and curation · 2025
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Dan LuDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-6952-9194
Marjan FaiziDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-7170-7762
Bryon DrownDepartment of Chemistry, Northwestern University, Evanston, IL 60208, USA.ORCID 0000-0002-5631-512X
Alina SimerzinDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-1397-3074
Joshua FrançoisDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0001-7367-205X
Gary BradshawLaboratory of Systems Pharmacology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0001-9724-6100
Neil KelleherDepartment of Chemistry, Northwestern University, Evanston, IL 60208, USA.ORCID 0000-0002-8815-3372
Ashwini JambhekarDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-1078-6601
Jeremy GunawardenaDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-7280-1152
Galit LahavDepartment of Systems Biology, Blavatnik Institute at Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-4758-6427

Funding

TR&D 7: Cell Specific ProteomicsP41GM108569 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2015 to 2024
$13.6M
Dynamics, Regulation and Function of p53 in Single CellsR35GM139572 · NIGMS · HARVARD MEDICAL SCHOOL · PI Galit Lahav · 2021 to 2026
$4.7M
Information Processing by Post-translational ModificationR01GM105375 · NIGMS · HARVARD MEDICAL SCHOOL · PI GUNAWARDENA, JEREMY, LAHAV, GALIT · 2015 to 2022
$3.0M
Top-down proteomic characterization of MEK/ERK in MAPK-driven cancersF32CA246894 · NCI · NORTHWESTERN UNIVERSITY · PI DROWN, BRYON SHANE · 2020 to 2021
$128k
NCI NIH HHS F32 CA246894NIGMS NIH HHS P41 GM108569NIGMS NIH HHS R01 GM105375NIGMS NIH HHS R35 GM139572
6 · The paper itself

Abstract

The master regulator of the DNA damage response, the transcription factor p53, orchestrates multiple downstream responses and coordinates repair processes. In response to double-strand DNA breaks, p53 exhibits pulses of expression, but how it achieves temporal coordination of downstream responses remains unclear. Here, we show that p53's posttranslational modification state is altered between its first and second pulses of expression. We show that acetylations at two sites, K373 and K382, were reduced in the second pulse, and these acetylations differentially affected p53 target genes, resulting in changes in gene expression programs over time. This interplay between dynamics and modification may offer a strategy for cellular hubs like p53 to temporally organize multiple processes in individual cells.

Indexed as

Gene Expression RegulationProtein Processing, Post-TranslationalTumor Suppressor Protein p53AcetylationCell Line, TumorDNA Breaks, Double-StrandedDNA DamageDNA RepairHumansTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID39454005
PMCPMC11506164

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.