Evidence map›Paper›PMID 39453048›Full record

ArticleVeterinary sciences2024

Genetic and Evolutionary Analysis of Canine Coronavirus in Guangxi Province, China, for 2021-2024.

Kaichuang Shi, Yandi Shi, Yuwen Shi, Yi Pan, Shuping Feng, Zhuo Feng, Yanwen Yin, Yang Tang, Zongqiang Li, Feng Long

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Veterinary sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Kaichuang ShiSchool of Basic Medical Sciences, Youjiang Medical University for Nationalities, Baise 533000, China.ORCID 0000-0002-1023-9635
Yandi ShiCollege of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Yuwen ShiCollege of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Yi PanSchool of Basic Medical Sciences, Youjiang Medical University for Nationalities, Baise 533000, China.
Shuping FengGuangxi Center for Animal Disease Control and Prevention, Nanning 530001, China.
Zhuo FengCollege of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Yanwen YinGuangxi Center for Animal Disease Control and Prevention, Nanning 530001, China.
Yang TangCollege of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Zongqiang LiCollege of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Feng LongGuangxi Center for Animal Disease Control and Prevention, Nanning 530001, China.ORCID 0000-0002-9625-0527

Funding

the Agricultural Science and Technology Program of Guangxi Agricultural and Rural Bureau, China. Grant no. Z2022198the Key Research and Development Program of Guangxi Science and Technology Bureau, China Grant no. AB21238003
6 · The paper itself

Abstract

Canine coronavirus (CCoV) is an important gastrointestinal pathogen that causes serious harm to pet dogs worldwide. Here, 1791 clinical samples were collected from pet dogs in different pet hospitals in Guangxi Province, southern China, for the 2021-2024 period and detected for CCoV by a multiplex RT-qPCR. The results showed that 8.43% (151/1791) of samples were positive for CCoV. Sixty-five positive samples were selected to amplify, sequence, and analyze S, M, and N genes. A sequence comparison revealed that the nucleotide and amino acid similarities of the S, M, and N genes were 94.86% and 94.62%, 96.85% and 97.80%, and 96.85% and 97.80%, respectively. Phylogenetic analysis indicated that 65 CCoV strains obtained in this study belonged to the CCoV-II genotype, of which 56 CCoV strains belonged to the CCoV-IIa subtype and 9 CCoV strains belonged to the CCoV-IIb subtype. A potential recombination event analysis of S gene sequences indicated that two CCoV strains, i.e., GXBSHM0328-34 and GXYLAC0318-35, have recombination signals. A Bayesian analysis indicated that the evolutionary rates of the S, M, and N genes were 1.791 × 10

Indexed as

canine coronavirus (CCoV)genetic diversityM geneN genephylogenetic analysisS gene

Identifiers

PMID39453048
PMCPMC11512276

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.