Evidence map›Paper›PMID 39449117›Full record

ArticleBMC genomics2024

Dengue virus surveillance in Nepal yields the first on-site whole genome sequences of isolates from the 2022 outbreak.

Rajindra Napit, Annie Elong Ngono, Kathie A Mihindukulasuriya, Aunji Pradhan, Binod Khadka, Smita Shrestha, Lindsay Droit, Anne Paredes, Lata Karki, Rabindra Khatiwada and 8 more

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Tracing Dengue's Evolutionary and Phylogenetic Pathways.Current topics in microbiology and immunology · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Rajindra Napit *Central Department of Biotechnology, Tribhuvan University, Kirtipur, Kathmandu, Nepal.
Annie Elong Ngono *Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.
Kathie A MihindukulasuriyaDepartment of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Aunji PradhanCentral Department of Biotechnology, Tribhuvan University, Kirtipur, Kathmandu, Nepal.
Binod KhadkaCentral Department of Biotechnology, Tribhuvan University, Kirtipur, Kathmandu, Nepal.
Smita ShresthaCentral Department of Biotechnology, Tribhuvan University, Kirtipur, Kathmandu, Nepal.
Lindsay DroitDepartment of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Anne ParedesDepartment of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Lata KarkiCentral Department of Biotechnology, Tribhuvan University, Kirtipur, Kathmandu, Nepal.
Rabindra KhatiwadaCentral Department of Biotechnology, Tribhuvan University, Kirtipur, Kathmandu, Nepal.
Mamata TamangCentral Department of Biotechnology, Tribhuvan University, Kirtipur, Kathmandu, Nepal.
Bimal Sharma ChaliseDepartment of Tropical and Infectious Disease, Sukraraj Tropical and Infectious Disease Hospital, Teku, Kathmandu, Nepal.
Manisha RawalDepartment of Tropical and Infectious Disease, Sukraraj Tropical and Infectious Disease Hospital, Teku, Kathmandu, Nepal.
Bimalesh Kumar JhaNational Public Health Laboratory, Teku, Kathmandu, Nepal.
David WangDepartment of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Scott A HandleyDepartment of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Sujan ShrestaCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA. sujan@lji.org.
Krishna Das ManandharCentral Department of Biotechnology, Tribhuvan University, Kirtipur, Kathmandu, Nepal. krishna.manandhar@gmail.com.

Funding

Emerging infections: surveillance, epidemiology and pathogenesisU01AI151810 · NIAID · WASHINGTON UNIVERSITY · PI Adrianus CM Boon, DAVID WANG · 2020 to 2026
$10.0M
NIAID NIH HHS U01 AI151810NIH HHS U01 AI151810University Grants Commission-Nepal under UGC Collaborative Research Grant Award No CRG-74/75- S&T-01
6 · The paper itself

Abstract

backgroundThe 4 serotypes of dengue virus (DENV1-4) can each cause potentially deadly dengue disease, and are spreading globally from tropical and subtropical areas to more temperate ones. Nepal provides a microcosm of this global phenomenon, having met each of these grim benchmarks. To better understand DENV transmission dynamics and spread into new areas, we chose to study dengue in Nepal and, in so doing, to build the onsite infrastructure needed to manage future, larger studies. METHODS AND

resultsDuring the 2022 dengue season, we enrolled 384 patients presenting at a hospital in Kathmandu with dengue-like symptoms; 79% of the study participants had active or recent DENV infection (NS1 antigen and IgM). To identify circulating serotypes, we screened serum from 50 of the NS1

conclusionThese findings highlight DENV's geographic expansion from neighboring countries, identify China and India as the likely origin of the 2022 DENV cases in Nepal, and demonstrate the feasibility of building onsite capacity for more rapid genomic surveillance of circulating DENV. These ongoing efforts promise to protect populations in Nepal and beyond by informing the development and deployment of DENV drugs and vaccines in real time.

Indexed as

DengueDengue VirusDisease OutbreaksGenome, ViralPhylogenyWhole Genome SequencingAdultFemaleHumansMaleNepalSerogroupCapacity buildingDengue outbreakDengue virusGenomic surveillanceWhole genome sequencing

Identifiers

PMID39449117
PMCPMC11515306

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.