Evidence map›Paper›PMID 39449003›Full record

ArticleProteome science2024

Genome-wide computational analysis of the dirigent gene family in Solanum lycopersicum.

Muhammad Abu Bakar Saddique, Ge Guan, Beibei Hu, Mudassir Khan, Muhammad Dawood Amjad, Sana Abbas, Zahid Hussain, Muhammad Faizan Khurram Maqsood, Xiumei Luo, Maozhi Ren

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Article in Proteome science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Muhammad Abu Bakar SaddiqueInstitute of Urban Agriculture, Chinese Academy of Agricultural Sciences, Chengdu National Agricultural2Science and Technology Center, Chengdu, 610213, China.
Ge GuanInstitute of Urban Agriculture, Chinese Academy of Agricultural Sciences, Chengdu National Agricultural2Science and Technology Center, Chengdu, 610213, China.
Beibei HuInstitute of Urban Agriculture, Chinese Academy of Agricultural Sciences, Chengdu National Agricultural2Science and Technology Center, Chengdu, 610213, China.
Mudassir KhanDepartment of Biomedical, Surgical and Dental Sciences, Università degli Studi di Milano, 20122, Milan, Italy.
Muhammad Dawood AmjadDepartment of Medical, Oral and Biotechnological Sciences, Università degli Studi 'G. d'Annunzio' Chieti - Pescara, Chieti, Italy.
Sana AbbasDepartment of Mathematics & Statistics, Pir Mehr Ali Shah Arid Agriculture University - PMAS AAUR, Rawalpindi, Pakistan.
Zahid HussainInstitute of Urban Agriculture, Chinese Academy of Agricultural Sciences, Chengdu National Agricultural2Science and Technology Center, Chengdu, 610213, China.
Muhammad Faizan Khurram MaqsoodCentre of Agricultural Biochemistry and Biotechnology (CABB), University of Agriculture, Faisalabad, Pakistan.
Xiumei LuoInstitute of Urban Agriculture, Chinese Academy of Agricultural Sciences, Chengdu National Agricultural2Science and Technology Center, Chengdu, 610213, China. luoxiumei@caas.cn.
Maozhi RenInstitute of Urban Agriculture, Chinese Academy of Agricultural Sciences, Chengdu National Agricultural2Science and Technology Center, Chengdu, 610213, China. renmaozhi01@caas.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDirigent (DIR) genes play a key role in the development of organic products in plants. They confer conformational influence on processes that lack stereoselectivity and regioselectivity through processes that are mostly understood. They are required to produce lignans, which are a unique and widely distributed family of plant secondary metabolites with intriguing pharmacological characteristics and potential role in plant development. DIR genes are implicated in the process of lignification and protect plants from environmental stresses, including biotic and abiotic stresses. Nevertheless, no research has been performed on the DIR gene family in Solanum lycopersicum. This study provides detailed information on the DIR gene family in S. lycopersicum. METHODS AND

resultsThe conserved domain analysis, phylogenetic analysis, evolutionary adaptation, cis-acting elements, proteomic analysis, signal peptide detection, transmembrane potential analysis, sequence identity and similarity analysis, gene assembly, genomic localization, duplication of gene analysis, and evolutionary linkage of 31 potential DIR genes were studied. All these analyses provide a deep understanding of DIR genes in the S. lycopersicum genome that will provide a useful reference for further functional analysis of the DIR genes in S. lycopersicum.

conclusionThis research provides an in-depth and comprehensive explanation of the detailed process and structural characterization of DIR genes in the genome of S. lycopersicum, laying the groundwork for future plant genetic engineering and crop development exploration. This work will provide valuable information for identifying DIR genes in higher plants and support future research on the DIR gene family.

Indexed as

BioinformaticsDirigent (DIR)Genome-wide analysisSolanum lycopersicum

Identifiers

PMID39449003
PMCPMC11515309

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.