Evidence map›Paper›PMID 39448799›Full record

ArticleEuropean journal of human genetics : EJHG2025

BCL11A intellectual developmental disorder: defining the clinical spectrum and genotype-phenotype correlations.

Angela Peron, Felice D'Arco, Kimberly A Aldinger, Constance Smith-Hicks, Christiane Zweier, Gyri A Gradek, Kimberley Bradbury, Andrea Accogli, Erica F Andersen, Ping Yee Billie Au and 65 more

Abstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The genetic architecture of fibromyalgia across 2.5 million individuals.medRxiv : the preprint server for health sciences · 2025
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Spring in EJHG.European journal of human genetics : EJHG · 2025
    Article
  12. Dias-Logan syndrome with aSAGE open medical case reports · 2025
    Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Structure, Function, and Genetics of the Cerebellum in Autism.Journal of psychiatry and brain science · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

75 authors.

Angela PeronDivision of Medical Genetics, Department of Pediatrics, University of Utah School of Medicine, Salt Lake City, UT, USA. angela.peron@unifi.it.ORCID http://orcid.org/0000-0002-1769-6548
Felice D'ArcoDepartment of Radiology, Great Ormond Street Hospital for Children, London, UK.
Kimberly A AldingerDepartment of Pediatrics, University of Washington School of Medicine, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-5406-8911
Constance Smith-HicksDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Christiane ZweierInstitute of Human Genetics, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.ORCID http://orcid.org/0000-0001-8002-2020
Gyri A GradekDepartment of Medical Genetics, Haukeland University Hospital, Bergen, Norway.
Kimberley BradburyDepartment of Medical Genetics, Guy's and St. Thomas' NHS Foundation Trust, London, UK.
Andrea AccogliGenomics and Clinical Genetics, IRCCS Istituto Giannina Gaslini, Genova, Italy.
Erica F AndersenARUP Laboratories, Cytogenetics and Genomic Microarray, Salt Lake City, UT, USA.ORCID http://orcid.org/0000-0002-7205-0600
Ping Yee Billie AuDepartment of Pediatrics, Division of Medical Genetics, Alberta Children's Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada.
Roberta BattiniIRCCS Fondazione Stella Maris, Pisa, Italy.
Daniah BelefordDivision of Medical Genetics, Department of Pediatrics, Benioff Children's Hospital, University of California, San Francisco, CA, USA.
Lynne M BirdDepartment of Pediatrics, University of California San Diego, San Diego, CA, USA.ORCID http://orcid.org/0000-0003-4833-3747
Arjan BoumanDepartment of Clinical Genetics, Erasmus MC University Medical Center, Rotterdam, The Netherlands.
Ange-Line BruelINSERM UMR 1231 Equipe GAD, Université de Bourgogne, Dijon, France.ORCID http://orcid.org/0000-0002-0526-465X
Øyvind Løvold BuskDepartment of Medical Genetics, Telemark Hospital Trust, 3710, Skien, Norway.
Philippe M CampeauDepartment of Pediatrics, CHU Sainte-Justine and University of Montreal, Montreal, QC, Canada.ORCID http://orcid.org/0000-0001-9713-7107
Valeria CapraGenomics and Clinical Genetics, IRCCS Istituto Giannina Gaslini, Genova, Italy.ORCID http://orcid.org/0000-0002-3097-0388
Colleen CarlstonDivision of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA.
Jenny CarmichaelDepartment of Clinical Genetics, Addenbrooke's Hospital, Cambridge, UK.
Anna ChasseventDepartment of Neurogenetics, Kennedy Krieger Institute, Baltimore, MD, USA.
Jill Clayton-SmithDivision of Evolution and Genomic Sciences School of Biological Sciences University of Manchester, Manchester, UK.
Michael J BamshadDivision of Genetic Medicine, Seattle Children's Hospital, Seattle, WA, USA.
Dawn L EarlDivision of Genetic Medicine, Seattle Children's Hospital, Seattle, WA, USA.
Laurence FaivreINSERM UMR 1231 Equipe GAD, Université de Bourgogne, Dijon, France.ORCID http://orcid.org/0000-0001-9770-444X
Christophe PhilippeINSERM UMR 1231 Equipe GAD, Université de Bourgogne, Dijon, France.ORCID http://orcid.org/0000-0001-7098-6520
Patrick FerreiraDepartment of Pediatrics, Division of Medical Genetics, Alberta Children's Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada.
Luitgard Graul-NeumannUniversitätsmedizin Berlin, Institut für Medizinische Genetik und Humangenetik, Berlin, Germany.
Mary J GreenExperimental Histopathology Laboratory, The Francis Crick Institute, London, UK.
Darrah HaffnerDepartment of Pediatrics, Division of Pediatric Neurology, Nationwide Children's Hospital and Ohio State University, Columbus, OH, USA.
Parthiv HaldipurCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA, USA.
Suhair HannaDepartment of Pediatric Immunology, Rappaport Children's Hospital, Rambam Health Care Campus, Haifa, Israel.
Gunnar HougeDepartment of Medical Genetics, Haukeland University Hospital, Bergen, Norway.
Wendy D JonesNorth East Thames Regional Genetics Service, Great Ormond Street Hospital for Children, Great Ormond Street, London, UK.ORCID http://orcid.org/0000-0003-4017-3806
Cornelia KrausInstitute of Human Genetics, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.
Birgit Elisabeth KristiansenDepartment of Neurohabilitation, Oslo University Hospital, Oslo, Norway.
James LespinasseHDR - Service de Génétique Médicale, Centre Hospitalier Métropole Savoie, Chambery, France.
Karen J LowClinical Genetics Service, University Hospitals Bristol and Weston NHS trust, Bristol, UK.
Sally Ann LynchDepartment of Clinical Genetics, Children's Health Ireland at Crumlin, Dublin, Ireland.ORCID http://orcid.org/0000-0003-3540-1333
Sofia MaiaMedical Genetics Unit, Hospital Pediátrico, Centro Hospitalar Universidade de Coimbra, Coimbra, Portugal.
Rong MaoDepartment of Pathology, University of Utah, Salt Lake City, UT, USA.
Ruta KalinauskieneManchester Centre for Genomic Medicine, St Mary's Hospital, Manchester University NHS Foundation Trust, Manchester, UK.
Catherine MelverDivision of Medical Genetics, Akron Children's Hospital, Akron, OH, USA.
Kimberly McDonaldUniversity of Mississippi Medical Center, Jackson, MS, USA.
Tara MontgomeryNorthern Genetics Service, Institute of Genetic Medicine, Newcastle upon Tyne NHS Foundation Trust, Newcastle, UK.
Manuela MorleoTelethon Institute of Genetics and Medicine, Pozzuoli, Napoli, Italy.
Constance MotterDivision of Medical Genetics, Akron Children's Hospital, Akron, OH, USA.
Amanda S OpenshawARUP Laboratories, Cytogenetics and Genomic Microarray, Salt Lake City, UT, USA.
Janice Cox PalumbosDivision of Medical Genetics, Department of Pediatrics, University of Utah School of Medicine, Salt Lake City, UT, USA.
Aditi Shah ParikhDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH, USA.
Yezmin Perilla-YoungDivision of Pediatric Genetics and Metabolism, University of North Carolina, Chapel Hill, NC, USA.
Cynthia M PowellDivision of Pediatric Genetics and Metabolism, University of North Carolina, Chapel Hill, NC, USA.
Richard PersonGeneDx, Gaithersburg, MD, USA.
Megha DesaiGeneDx, Gaithersburg, MD, USA.
Juliette PiardCentre de Génétique Humaine, Université de Franche-Comté, CHU, Besançon, France.ORCID http://orcid.org/0000-0001-5244-5325
Rolph PfundtDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, Nijmegen, the Netherlands.
Marcello ScalaU.O.C. Genetica Medica, IRCCS Istituto Giannina Gaslini, Genova, Italy.ORCID http://orcid.org/0000-0003-2194-7239
Margaux Serey-GautCentre de Génétique Humaine, Université de Franche-Comté, CHU, Besançon, France.
Deborah ShearsOxford Centre for Genomic Medicine, Oxford University Hospitals NHS Foundation Trust, Oxford, UK.
Anne SlavotinekDivision of Medical Genetics, Department of Pediatrics, Benioff Children's Hospital, University of California, San Francisco, CA, USA.
Mohnish SuriNottingham Clinical Genetics Service; Nottingham University Hospitals NHS Trust, Nottingham, UK.
Claire TurnerClinical Genetics, Royal Devon and Exeter NHS Foundation Trust, Exeter, UK.
Tatiana TvrdikDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA.
Karin WeissRappaport Faculty of Medicine, Technion - Israel Institute of Technology, Haifa, Israel.ORCID http://orcid.org/0000-0003-0998-810X
Ingrid M WentzensenGeneDx, Gaithersburg, MD, USA.
Marcella ZollinoDipartimento Universitario Scienze della Vita e Sanità Pubblica, Sezione di Medicina Genomica, Università Cattolica Sacro Cuore, Roma, Italy.ORCID http://orcid.org/0000-0003-4871-9519
Tzung-Chien HsiehInstitute for Genomic Statistics and Bioinformatics, University Hospital Bonn, Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn, Germany.ORCID http://orcid.org/0000-0003-3828-4419
C4RCD Research Group
Telethon Undiagnosed Disease Program (TUDP)
University of Washington Center for Mendelian Genomics (UW-CMG)
Bert B A de VriesDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, Nijmegen, the Netherlands.ORCID http://orcid.org/0000-0002-0000-2917
Francois GuillemotNeural Stem Cell Biology Laboratory, The Francis Crick Institute, London, UK.
William B DobynsCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-7681-2844
David ViskochilDivision of Medical Genetics, Department of Pediatrics, University of Utah School of Medicine, Salt Lake City, UT, USA.
Cristina DiasDepartment of Medical Genetics, Guy's and St. Thomas' NHS Foundation Trust, London, UK. cristina.dias@kcl.ac.uk.ORCID http://orcid.org/0000-0001-5411-4984

Funding

CTSA UM1 Program at University of UtahUM1TR004409 · NCATS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI RACHEL HESS, Jennifer Juhl Majersik · 2023 to 2026
$21.9M
UW Center for Mendelian GenomicsU54HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2012 to 2015
$20.0M
LABORATORY OF DEVELOPMENTAL BIOLOGYR24HD000836 · NICHD · UNIVERSITY OF WASHINGTON · PI Ian Amos Glass · 1995 to 2026
$16.9M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
NHGRI Genome Sequencing Program Coordinating CenterU24HG008956 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI BUYSKE, STEVEN G, MATISE, TARA C. · 2016 to 2020
$4.9M
Advancing the translatability of mouse models for cancer immunotherapyR01CA210561 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AKHURST, ROSEMARY J · 2018 to 2021
$2.0M
NCATS NIH HHS UM1 TR004409NCI NIH HHS R01 CA210561NHGRI NIH HHS U24 HG008956NHGRI NIH HHS U54 HG006493NHGRI NIH HHS UM1 HG006493NICHD NIH HHS R24 HD000836U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA210561U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) UM1;HG006493Wellcome TrustWellcome Trust (Wellcome) 209568/Z/17/Z
6 · The paper itself

Abstract

An increasing number of individuals with intellectual developmental disorder (IDD) and heterozygous variants in BCL11A are identified, yet our knowledge of manifestations and mutational spectrum is lacking. To address this, we performed detailed analysis of 42 individuals with BCL11A-related IDD (BCL11A-IDD, a.k.a. Dias-Logan syndrome) ascertained through an international collaborative network, and reviewed 35 additional previously reported patients. Analysis of 77 affected individuals identified 60 unique disease-causing variants (30 frameshift, 7 missense, 6 splice-site, 17 stop-gain) and 8 unique BCL11A microdeletions. We define the most prevalent features of BCL11A-IDD: IDD, postnatal-onset microcephaly, hypotonia, behavioral abnormalities, autism spectrum disorder, and persistence of fetal hemoglobin (HbF), and identify autonomic dysregulation as new feature. BCL11A-IDD is distinguished from 2p16 microdeletion syndrome, which has a higher incidence of congenital anomalies. Our results underscore BCL11A as an important transcription factor in human hindbrain development, identifying a previously underrecognized phenotype of a small brainstem with a reduced pons/medulla ratio. Genotype-phenotype correlation revealed an isoform-dependent trend in severity of truncating variants: those affecting all isoforms are associated with higher frequency of hypotonia, and those affecting the long (BCL11A-L) and extra-long (-XL) isoforms, sparing the short (-S), are associated with higher frequency of postnatal microcephaly. With the largest international cohort to date, this study highlights persistence of fetal hemoglobin as a consistent biomarker and hindbrain abnormalities as a common feature. It contributes significantly to our understanding of BCL11A-IDD through an extensive unbiased multi-center assessment, providing valuable insights for diagnosis, management and counselling, and into BCL11A's role in brain development.

Indexed as

Intellectual DisabilityNuclear ProteinsAdolescentAdultChildChild, PreschoolFemaleGenetic Association StudiesHumansInfantMaleMicrocephalyPhenotypeRepressor ProteinsBCL11A protein, humanNuclear ProteinsRepressor Proteins

Identifiers

PMID39448799
PMCPMC11893779

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.