Evidence map›Paper›PMID 39445019›Full record

ArticleFrontiers in immunology2024

Prognostic modeling of hepatocellular carcinoma based on T-cell proliferation regulators: a bioinformatics approach.

Long Hai, Xiao-Yang Bai, Xia Luo, Shuai-Wei Liu, Zi-Min Ma, Li-Na Ma, Xiang-Chun Ding

Abstract read
In one paragraph

Article in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Frontiers in cell and developmental biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Long Hai *Department of Infectious Disease, General Hospital of Ningxia Medical University, Yinchuan, Ningxia, China.
Xiao-Yang Bai *Department of Infectious Disease, General Hospital of Ningxia Medical University, Yinchuan, Ningxia, China.
Xia LuoDepartment of Infectious Disease, General Hospital of Ningxia Medical University, Yinchuan, Ningxia, China.
Shuai-Wei LiuDepartment of Infectious Disease, General Hospital of Ningxia Medical University, Yinchuan, Ningxia, China.
Zi-Min MaWeiluo Microbial Pathogens Monitoring Technology Co., Ltd. of Beijing, Beijing, China.
Li-Na MaDepartment of Infectious Disease, General Hospital of Ningxia Medical University, Yinchuan, Ningxia, China.
Xiang-Chun DingDepartment of Infectious Disease, General Hospital of Ningxia Medical University, Yinchuan, Ningxia, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: The prognostic value and immune significance of T-cell proliferation regulators (TCRs) in hepatocellular carcinoma (HCC) have not been previously reported. This study aimed to develop a new prognostic model based on TCRs in patients with HCC. Method: This study used The Cancer Genome Atlas-Liver Hepatocellular Carcinoma (TCGA-LIHC) and International Cancer Genome Consortium-Liver Cancer-Riken, Japan (ICGC-LIRI-JP) datasets along with TCRs. Differentially expressed TCRs (DE-TCRs) were identified by intersecting TCRs and differentially expressed genes between HCC and non-cancerous samples. Prognostic genes were determined using Cox regression analysis and were used to construct a risk model for HCC. Kaplan-Meier survival analysis was performed to assess the difference in survival between high-risk and low-risk groups. Receiver operating characteristic curve was used to assess the validity of risk model, as well as for testing in the ICGC-LIRI-JP dataset. Additionally, independent prognostic factors were identified using multivariate Cox regression analysis and proportional hazards assumption, and they were used to construct a nomogram model. TCGA-LIHC dataset was subjected to tumor microenvironment analysis, drug sensitivity analysis, gene set variation analysis, and immune correlation analysis. The prognostic genes were analyzed using consensus clustering analysis, mutation analysis, copy number variation analysis, gene set enrichment analysis, and molecular prediction analysis. Results: Among the 18 DE-TCRs, six genes ( Conclusions: This bioinformatics analysis identified six TCR genes associated with HCC prognosis that can serve as diagnostic markers and therapeutic targets for HCC.

Indexed as

Biomarkers, TumorCarcinoma, HepatocellularComputational BiologyLiver NeoplasmsT-LymphocytesCell ProliferationFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleNomogramsPrognosisTumor MicroenvironmentBiomarkers, TumorbioinformaticGEOhepatocellular carcinomaprognostic modelT-cell proliferation regulators

Identifiers

PMID39445019
PMCPMC11496079

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.