Evidence map›Paper›PMID 39443811›Full record

ArticleNature genetics2024

Systematic perturbation screens identify regulators of inflammatory macrophage states and a role for TNF mRNA m6A modification.

Simone M Haag, Shiqi Xie, Celine Eidenschenk, Jean-Philippe Fortin, Marinella Callow, Mike Costa, Aaron Lun, Chris Cox, Sunny Z Wu, Rachana N Pradhan and 15 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Simone M HaagGenentech Inc., South San Francisco, CA, USA.
Shiqi XieGenentech Inc., South San Francisco, CA, USA.
Celine EidenschenkGenentech Inc., South San Francisco, CA, USA.
Jean-Philippe FortinGenentech Inc., South San Francisco, CA, USA.
Marinella CallowGenentech Inc., South San Francisco, CA, USA.
Mike CostaGenentech Inc., South San Francisco, CA, USA.
Aaron LunGenentech Inc., South San Francisco, CA, USA.
Chris CoxGenentech Inc., South San Francisco, CA, USA.
Sunny Z WuGenentech Inc., South San Francisco, CA, USA.
Rachana N PradhanGenentech Inc., South San Francisco, CA, USA.
Jaclyn LockGenentech Inc., South San Francisco, CA, USA.
Julia A KuhnGenentech Inc., South San Francisco, CA, USA.
Loryn HolokaiGenentech Inc., South San Francisco, CA, USA.
Minh ThaiGenentech Inc., South San Francisco, CA, USA.
Emily FreundGenentech Inc., South San Francisco, CA, USA.
Ariane NissenbaumGenentech Inc., South San Francisco, CA, USA.
Mary KeirGenentech Inc., South San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-0637-4092
Christopher J BohlenGenentech Inc., South San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-1185-2260
Scott MartinGenentech Inc., South San Francisco, CA, USA.
Kathryn Geiger-SchullerGenentech Inc., South San Francisco, CA, USA.
Hussein A HejaseGenentech Inc., South San Francisco, CA, USA.
Brian L YaspanGenentech Inc., South San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-3787-2510
Sandra Melo CarlosGenentech Inc., South San Francisco, CA, USA. melocars@gene.com.ORCID http://orcid.org/0009-0000-8143-5417
Shannon J TurleyGenentech Inc., South San Francisco, CA, USA. turley.shannon@gene.com.ORCID http://orcid.org/0000-0002-0444-3031
Aditya MurthyGenentech Inc., South San Francisco, CA, USA. aditya.murthy@gilead.com.ORCID http://orcid.org/0000-0002-6130-9568

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Macrophages exhibit remarkable functional plasticity, a requirement for their central role in tissue homeostasis. During chronic inflammation, macrophages acquire sustained inflammatory 'states' that contribute to disease, but there is limited understanding of the regulatory mechanisms that drive their generation. Here we describe a systematic functional genomics approach that combines genome-wide phenotypic screening in primary murine macrophages with transcriptional and cytokine profiling of genetic perturbations in primary human macrophages to uncover regulatory circuits of inflammatory states. This process identifies regulators of five distinct states associated with key features of macrophage function. Among these regulators, loss of the N

Indexed as

AdenosineInflammationMacrophagesRNA, MessengerRNA StabilityTumor Necrosis Factor-alphaAnimalsGene Expression RegulationHumansImmunity, InnateMiceMice, Inbred C57BLRNA Processing, Post-TranscriptionalAdenosineN-methyladenosineRNA, MessengerTumor Necrosis Factor-alpha

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.