Evidence map›Paper›PMID 39443503›Full record

ArticleScientific data2024

AI-Generated Annotations Dataset for Diverse Cancer Radiology Collections in NCI Image Data Commons.

Gowtham Krishnan Murugesan, Diana McCrumb, Mariam Aboian, Tej Verma, Rahul Soni, Fatima Memon, Keyvan Farahani, Linmin Pei, Ulrike Wagner, Andrey Y Fedorov and 3 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Gowtham Krishnan MurugesanBAMF Health, Grand Rapids, MI, USA. gowtham.murugesan@bamfhealth.com.ORCID 0000-0002-2160-6648
Diana McCrumbBAMF Health, Grand Rapids, MI, USA.
Mariam AboianYale School of Medicine, New Haven, CT, USA.
Tej VermaYale School of Medicine, New Haven, CT, USA.
Rahul SoniBAMF Health, Grand Rapids, MI, USA.
Fatima MemonYale School of Medicine, New Haven, CT, USA.
Keyvan FarahaniNational Institute of Health, Bethesda, MD, USA.
Linmin PeiFrederick National Laboratory for Cancer Research, Frederick, MD, USA.
Ulrike WagnerFrederick National Laboratory for Cancer Research, Frederick, MD, USA.
Andrey Y FedorovBrigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.ORCID 0000-0003-4806-9413
David CluniePixelMed Publishing, Bangor, PA, USA.ORCID 0000-0002-2406-1145
Stephen MooreBAMF Health, Grand Rapids, MI, USA.
Jeff Van OssBAMF Health, Grand Rapids, MI, USA.

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Quantitative MRI for Predicting Response of Breast Cancer to Neoadjuvant TherapyU01CA142565 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI KARCZMAR, GREGORY S., NANDA, RITA · 2010 to 2019
$4.5M
Quantitiative MRI of prostate cancer as a biomarker and guide for treatmentU01CA151261 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI FENNESSY, FIONA · 2010 to 2014
$1.8M
NCATS NIH HHS UL1 TR001863NCI NIH HHS 75N91019D00024NCI NIH HHS U01 CA142565NCI NIH HHS U01 CA151261
6 · The paper itself

Abstract

The National Cancer Institute (NCI) Image Data Commons (IDC) offers publicly available cancer radiology collections for cloud computing, crucial for developing advanced imaging tools and algorithms. Despite their potential, these collections are minimally annotated; only 4% of DICOM studies in collections considered in the project had existing segmentation annotations. This project increases the quantity of segmentations in various IDC collections. We produced high-quality, AI-generated imaging annotations dataset of tissues, organs, and/or cancers for 11 distinct IDC image collections. These collections contain images from a variety of modalities, including computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET). The collections cover various body parts, such as the chest, breast, kidneys, prostate, and liver. A portion of the AI annotations were reviewed and corrected by a radiologist to assess the performance of the AI models. Both the AI's and the radiologist's annotations were encoded in conformance to the Digital Imaging and Communications in Medicine (DICOM) standard, allowing for seamless integration into the IDC collections as third-party analysis collections. All the models, images and annotations are publicly accessible.

Indexed as

National Cancer Institute (U.S.)NeoplasmsArtificial IntelligenceCloud ComputingHumansMagnetic Resonance ImagingPositron-Emission TomographyTomography, X-Ray ComputedUnited States

Identifiers

PMID39443503
PMCPMC11500357

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.