Evidence map›Paper›PMID 39443460›Full record

ArticleNature communications2024

Chemical inhibition of stomatal differentiation by perturbation of the master-regulatory bHLH heterodimer via an ACT-Like domain.

Ayami Nakagawa, Krishna Mohan Sepuru, Shu Jan Yip, Hyemin Seo, Calvin M Coffin, Kota Hashimoto, Zixuan Li, Yasutomo Segawa, Rie Iwasaki, Hiroe Kato and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Ayami Nakagawa *Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, Japan.ORCID 0000-0001-7230-9451
Krishna Mohan Sepuru *Howard Hughes Medical Institute, The University of Texas at Austin, Austin, TX, USA.ORCID 0000-0002-3675-6294
Shu Jan Yip *Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, Japan.
Hyemin SeoHoward Hughes Medical Institute, The University of Texas at Austin, Austin, TX, USA.
Calvin M CoffinHoward Hughes Medical Institute, The University of Texas at Austin, Austin, TX, USA.
Kota HashimotoDepartment of Chemistry, Kwansei Gakuin University, Sanda, Hyogo, Japan.
Zixuan LiDepartment of Chemistry, Kwansei Gakuin University, Sanda, Hyogo, Japan.
Yasutomo SegawaInstitute for Molecular Science and SOKENDAI, Myodaiji, Okazaki, Japan.ORCID 0000-0001-6439-8546
Rie IwasakiInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, Japan.
Hiroe KatoInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, Japan.
Daisuke KuriharaInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, Japan.ORCID 0000-0003-2703-0405
Yusuke AiharaInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, Japan.
Stephanie KimDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA.
Toshinori KinoshitaInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, Japan.ORCID 0000-0001-7621-1259
Kenichiro ItamiInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, Japan.ORCID 0000-0001-5227-7894
Soon-Ki HanInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, Japan.
Kei MurakamiInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, Japan. kei.murakami@kwansei.ac.jp.ORCID 0000-0001-5405-3069
Keiko U ToriiInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, Japan. ktorii@utexas.edu.ORCID 0000-0002-6168-427X

Funding

Howard Hughes Medical Institute (HHMI) TORIIMEXT | Japan Society for the Promotion of Science (JSPS) JP16H01237MEXT | Japan Society for the Promotion of Science (JSPS) JP17H06476MEXT | Japan Society for the Promotion of Science (JSPS) JP19H00990MEXT | Japan Society for the Promotion of Science (JSPS) Research Fellowship for Young Scientists DC1MEXT | JST | Precursory Research for Embryonic Science and Technology (PRESTO) JPMJPR20D8
6 · The paper itself

Abstract

Selective perturbation of protein interactions with chemical compounds enables dissection and control of developmental processes. Differentiation of stomata, cellular valves vital for plant growth and survival, is specified by the basic-helix-loop-helix (bHLH) heterodimers. Harnessing a new amination reaction, we here report a synthesis, derivatization, target identification, and mode of action of an atypical doubly-sulfonylated imidazolone, Stomidazolone, which triggers stomatal stem cell arrest. Our forward chemical genetics followed by biophysical analyses elucidates that Stomidazolone directly binds to the C-terminal ACT-Like (ACTL) domain of MUTE, a master regulator of stomatal differentiation, and perturbs its heterodimerization with a partner bHLH, SCREAM in vitro and in plant cells. On the other hand, Stomidazolone analogs that are biologically inactive do not bind to MUTE or disrupt the SCREAM-MUTE heterodimers. Guided by structural docking modeling, we rationally design MUTE with reduced Stomidazolone binding. These engineered MUTE proteins are fully functional and confer Stomidazolone resistance in vivo. Our study identifies doubly-sulfonylated imidazolone as a direct inhibitor of the stomatal master regulator, further expanding the chemical space for perturbing bHLH-ACTL proteins to manipulate plant development.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsPlant StomataCell DifferentiationGene Expression Regulation, PlantImidazolesMolecular Docking SimulationProtein BindingProtein DomainsProtein MultimerizationArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsImidazolesMUTE protein, Arabidopsis

Identifiers

PMID39443460
PMCPMC11500415

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.