Evidence map›Paper›PMID 39441804›Full record

ArticleBioinformatics (Oxford, England)2024

Target controllability: a feed-forward greedy algorithm in complex networks, meeting Kalman's rank condition.

Seyedeh Fatemeh Khezri, Ali Ebrahimi, Changiz Eslahchi

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Article in Bioinformatics (Oxford, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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1citing papers in PubMed
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1 citing paper in PubMed.

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5 · Who and what money

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3 authors.

Seyedeh Fatemeh KhezriDepartment of Computer and Data Sciences, Shahid Beheshti University, Tehran 1983969411, Iran.
Ali EbrahimiSchool of Biological Sciences, Institute for Research in Fundamental Sciences (IPM), Tehran 19395-5746, Iran.
Changiz EslahchiDepartment of Computer and Data Sciences, Shahid Beheshti University, Tehran 1983969411, Iran.ORCID 0000-0002-8913-3904

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

motivationThe concept of controllability within complex networks is pivotal in determining the minimal set of driver vertices required for the exertion of external signals, thereby enabling control over the entire network's vertices. Target controllability further refines this concept by focusing on a subset of vertices within the network as the specific targets for control, both of which are known to be NP-hard problems. Crucially, the effectiveness of the driver set in achieving control of the network is contingent upon satisfying a specific rank condition, as introduced by Kalman. On the other hand, structural controllability provides a complementary approach to understanding network control, emphasizing the identification of driver vertices based on the network's structural properties. However, in structural controllability approaches, the Kalman condition may not always be satisfied.

resultsIn this study, we address the challenge of target controllability by proposing a feed-forward greedy algorithm designed to efficiently handle large networks while meeting the Kalman controllability rank condition. We further enhance our method's efficacy by integrating it with Barabasi et al.'s structural controllability approach. This integration allows for a more comprehensive control strategy, leveraging both the dynamical requirements specified by Kalman's rank condition and the structural properties of the network. Empirical evaluation across various network topologies demonstrates the superior performance of our algorithms compared to existing methods, consistently requiring fewer driver vertices for effective control. Additionally, our method's application to protein-protein interaction networks associated with breast cancer reveals potential drug repurposing candidates, underscoring its biomedical relevance. This study highlights the importance of addressing both structural and dynamical aspects of network controllability for advancing control strategies in complex systems. AVAILABILITY AND IMPLEMENTATION: The source code is available for free at:Https://github.com/fatemeKhezry/targetControllability.

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AlgorithmsComputational BiologyHumans

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PMID39441804
PMCPMC11568069

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