Evidence map›Paper›PMID 39441069›Full record

ArticleNucleic acids research2024

DNA supercoiling enhances DNA condensation by ParB proteins.

Alejandro Martin-Gonzalez, Miloš Tišma, Brian T Analikwu, Anders Barth, Richard Janissen, Hammam Antar, Gianluca Kemps, Stephan Gruber, Cees Dekker

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Chromosome topology gates productive RecA homology search.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alejandro Martin-GonzalezDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Van der Massweg 9, 2629HZ Delft, Netherlands.ORCID 0000-0002-5671-3646
Miloš TišmaDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Van der Massweg 9, 2629HZ Delft, Netherlands.ORCID 0000-0002-8449-142X
Brian T AnalikwuDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Van der Massweg 9, 2629HZ Delft, Netherlands.ORCID 0000-0003-0158-1989
Anders BarthDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Van der Massweg 9, 2629HZ Delft, Netherlands.ORCID 0000-0003-3671-3072
Richard JanissenDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Van der Massweg 9, 2629HZ Delft, Netherlands.ORCID 0000-0003-0901-3433
Hammam AntarDepartment of Fundamental Microbiology (DMF), Faculty of Biology and Medicine (FBM), University of Lausanne (UNIL); CH-1015 Lausanne, Switzerland.ORCID 0000-0002-4587-1833
Gianluca KempsDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Van der Massweg 9, 2629HZ Delft, Netherlands.
Stephan GruberDepartment of Fundamental Microbiology (DMF), Faculty of Biology and Medicine (FBM), University of Lausanne (UNIL); CH-1015 Lausanne, Switzerland.ORCID 0000-0002-0150-0395
Cees DekkerDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Van der Massweg 9, 2629HZ Delft, Netherlands.ORCID 0000-0001-6273-071X

Funding

European Research Council 883684SNSF 310030_197770
6 · The paper itself

Abstract

The ParABS system plays a critical role in bacterial chromosome segregation. The key component of this system, ParB, loads and spreads along DNA to form a local protein-DNA condensate known as a partition complex. As bacterial chromosomes are heavily supercoiled due to the continuous action of RNA polymerases, topoisomerases and nucleoid-associated proteins, it is important to study the impact of DNA supercoiling on the ParB-DNA partition complex formation. Here, we use an in-vitro single-molecule assay to visualize ParB on supercoiled DNA. Unlike most DNA-binding proteins, individual ParB proteins are found to not pin plectonemes on supercoiled DNA, but freely diffuse along supercoiled DNA. We find that DNA supercoiling enhances ParB-DNA condensation, which initiates at lower ParB concentrations than on DNA that is torsionally relaxed. ParB proteins induce a DNA-protein condensate that strikingly absorbs all supercoiling writhe. Our findings provide mechanistic insights that have important implications for our understanding of bacterial chromosome organization and segregation.

Indexed as

Bacterial ProteinsDNA, BacterialDNA, SuperhelicalChromosomes, BacterialChromosome SegregationDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsSingle Molecule ImagingBacterial ProteinsDNA, BacterialDNA-Binding ProteinsDNA, SuperhelicalEscherichia coli Proteins

Identifiers

PMID39441069
PMCPMC11602141

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.