Evidence map›Paper›PMID 39440981›Full record

ArticleApplied and environmental microbiology2024

Assessing antimicrobial resistance in pasture-based dairy farms: a 15-month surveillance study in New Zealand.

Rose M Collis, Patrick J Biggs, Sara A Burgess, Anne C Midwinter, Jinxin Liu, Gale Brightwell, Adrian L Cookson

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Prevalence and antimicrobial resistance ofOpen veterinary journal · 2025
    Pooled it
  2. Article
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rose M CollisFood System Integrity, AgResearch Ltd, Hopkirk Research Institute, Massey University, Palmerston North, New Zealand.ORCID 0000-0001-5786-9143
Patrick J BiggsMolecular Epidemiology and Public Health Laboratory, School of Veterinary Science, Massey University, Palmerston North, New Zealand.ORCID 0000-0002-0285-4101
Sara A BurgessMolecular Epidemiology and Public Health Laboratory, School of Veterinary Science, Massey University, Palmerston North, New Zealand.ORCID 0000-0003-1449-7321
Anne C MidwinterMolecular Epidemiology and Public Health Laboratory, School of Veterinary Science, Massey University, Palmerston North, New Zealand.ORCID 0000-0001-5731-3233
Jinxin LiuLaboratory of Gastrointestinal Microbiology, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, China.ORCID 0000-0002-5302-866X
Gale BrightwellFood System Integrity, AgResearch Ltd, Hopkirk Research Institute, Massey University, Palmerston North, New Zealand.
Adrian L CooksonFood System Integrity, AgResearch Ltd, Hopkirk Research Institute, Massey University, Palmerston North, New Zealand.ORCID 0000-0002-8197-3386

Funding

AgResearch Strategic Science Investment Fund PRJ0126322New Zealand Food Safety Science and Research Centre (NZFSSRC)
6 · The paper itself

Abstract

Antimicrobial resistance is a global public and animal health concern. Antimicrobial resistance genes (ARGs) have been detected in dairy farm environments globally; however, few longitudinal studies have utilized shotgun metagenomics for ARG surveillance in pasture-based systems. This 15-month study aimed to undertake a baseline survey using shotgun metagenomics to assess the relative abundance and diversity of ARGs in two pasture-based dairy farm environments in New Zealand with different management practices. There was no statistically significant difference in overall ARG relative abundance between the two dairy farms (

Indexed as

DairyingFarmsFecesAnimalsAnti-Bacterial AgentsBacteriaCattleDrug Resistance, BacterialGenes, BacterialMetagenomicsNew ZealandRNA, Ribosomal, 16SSoil MicrobiologyAnti-Bacterial AgentsRNA, Ribosomal, 16Santimicrobial resistanceantimicrobial resistance genesdairy farm environmentNew Zealandpasture-based systemresistomeshotgun metagenomic sequencing

Identifiers

PMID39440981
PMCPMC11577782

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.