Evidence map›Paper›PMID 39440790›Full record

ArticleJournal of chemical information and modeling2024

Machine Learning-Driven Data Valuation for Optimizing High-Throughput Screening Pipelines.

Joshua Hesse, Davide Boldini, Stephan A Sieber

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Joshua HesseTechnical University of Munich, TUM School of Natural Sciences, Department of Bioscience, Center for Functional Protein Assemblies (CPA), 85748 Garching bei München, Germany.ORCID 0009-0004-1819-7726
Davide BoldiniTechnical University of Munich, TUM School of Natural Sciences, Department of Bioscience, Center for Functional Protein Assemblies (CPA), 85748 Garching bei München, Germany.
Stephan A SieberTechnical University of Munich, TUM School of Natural Sciences, Department of Bioscience, Center for Functional Protein Assemblies (CPA), 85748 Garching bei München, Germany.ORCID 0000-0002-9400-906X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the rapidly evolving field of drug discovery, high-throughput screening (HTS) is essential for identifying bioactive compounds. This study introduces a novel application of data valuation, a concept for evaluating the importance of data points based on their impact, to enhance drug discovery pipelines. Our approach improves active learning for compound library screening, robustly identifies true and false positives in HTS data, and identifies important inactive samples in an imbalanced HTS training, all while accounting for computational efficiency. We demonstrate that importance-based methods enable more effective batch screening, reducing the need for extensive HTS. Machine learning models accurately differentiate true biological activity from assay artifacts, streamlining the drug discovery process. Additionally, importance undersampling aids in HTS data set balancing, improving machine learning performance without omitting crucial inactive samples. These advancements could significantly enhance the efficiency and accuracy of drug development.

Indexed as

Drug DiscoveryHigh-Throughput Screening AssaysMachine LearningDrug Evaluation, Preclinical

Identifiers

PMID39440790
PMCPMC11558681

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.