Evidence map›Paper›PMID 39440782›Full record

ArticleCurrent medicinal chemistry2025

Multiple Machine Learning Models, Molecular Subtyping and Singlecell Analysis Identify PANoptosis-related Core Genes and their Association with Subtypes in Crohn's Disease.

Yi Chen, Lu Zhang, Wan-Ying Huang, Rong-Quan He, Zhi-Guang Huang, Hui Li, Rui Song, Jia-Wei Zhang, Juan He, Gang Chen

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Article in Current medicinal chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yi ChenDepartment of Pathology, The First Affiliated Hospital of Guangxi Medical University, No. 6, Shuangyong Road, Nanning, Guangxi Zhuang Autonomous Region, 530031, China.ORCID 0000-0003-0236-7263
Lu ZhangDepartment of Pathology, The First Affiliated Hospital of Guangxi Medical University, No. 6, Shuangyong Road, Nanning, Guangxi Zhuang Autonomous Region, 530031, China.ORCID 0009-0004-0981-995X
Wan-Ying HuangDepartment of Pathology, The First Affiliated Hospital of Guangxi Medical University, No. 6, Shuangyong Road, Nanning, Guangxi Zhuang Autonomous Region, 530031, China.ORCID 0000-0002-8314-5963
Rong-Quan HeDepartment of Medical Oncology, The First Affiliated Hospital of Guangxi Medical University, No. 6, Shuangyong Road, Nanning, Guangxi Zhuang Autonomous Region, 530031, China.ORCID 0000-0002-7752-2080
Zhi-Guang HuangDepartment of Pathology, The First Affiliated Hospital of Guangxi Medical University, No. 6, Shuangyong Road, Nanning, Guangxi Zhuang Autonomous Region, 530031, China.ORCID 0000-0003-4457-9491
Hui LiDepartment of Colorectal & Anal Surgery, The First Affiliated Hospital of Guangxi Medical University, No. 6, Shuangyong Road, Nanning, Guangxi Zhuang Autonomous Region, 530031, China.ORCID 0000-0003-3419-1768
Rui SongDepartment of Radiology, The First Affiliated Hospital of Guangxi Medical University, No. 6, Shuangyong Road, Nanning, Guangxi Zhuang Autonomous Region, 530031, China.ORCID 0009-0004-0306-1455
Jia-Wei ZhangDepartment of Gastrointestinal Surgery, The Eight Affiliated Hospital of Guangxi Medical University / Guigang City People´s Hospital, No. 1, Zhongshan Middle Road, Guigang, Guangxi Zhuang Autonomous Region, 530031, China.ORCID 0009-0002-9588-7339
Juan HeDepartment of Pathology, The First Affiliated Hospital of Guangxi Medical University, No. 6, Shuangyong Road, Nanning, Guangxi Zhuang Autonomous Region, 530031, China.ORCID 0000-0002-6485-1336
Gang ChenDepartment of Pathology, The First Affiliated Hospital of Guangxi Medical University, No. 6, Shuangyong Road, Nanning, Guangxi Zhuang Autonomous Region, 530031, China.ORCID 0000-0002-4864-1451

Funding

China Undergraduate Innovation and Entrepreneurship Training Program S202310598169Future Academic Star of Guangxi Medical University WLXSZX23114Guangxi Educational Science Planning Key Project 2022ZJY2791Guangxi Higher Education Undergraduate Teaching Reform Project 2022JGA146Guangxi Medical University Undergraduate Education and Teaching Reform Project 2023Z10Guangxi Zhuang Autonomous Region Health Commission Scientific Research Project Z20201174Innovation Project of Guangxi Graduate Education YCBZ2023110
6 · The paper itself

Abstract

backgroundPANoptosis plays an important role in many inflammatory diseases. However, there are no reports on the association between PANoptosis and CD. MATERIALS AND

methodsThis study used five machine learning algorithms - least absolute shrinkage and selection operator, support vector machine, random forest, decision tree and Gaussian mixture models - to construct CD's PANoptosis signature. Unsupervised hierarchical clustering analysis was used to identify PANoptosis-associated subgroups of CD. Gene Ontology (GO) enrichment analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, Gene Set Enrichment Analysis (GSEA) and Gene Set Variation Analysis (GSVA) were conducted to compare the PANoptosis-associated subgroups of CD among the potential biological mechanisms. Single sample GSEA was used to assess immune microenvironmental differences among the subgroups. The potential role of PANoptosis in CD was further explored using single-cell RNA-Seq (scRNA-Seq) for PANoptosis scoring, differential analysis, pseudotime analysis, cellular communication analysis and weighted gene co-expression network analysis (WGCNA) analysis.

resultsCD's PANoptosis signature consisted of seven genes:

conclusionThis study is the first to construct a PANoptosis signature with excellent efficacy in recognising CD. PANoptosis may mediate the process of CD through inflammatory and immune mechanisms, such as NF- kappaB, MAPK and leukocyte migration.

Indexed as

Crohn DiseaseMachine LearningHumansCrohn's diseaseleukocyte activationmachine learning.MAPKNF-kappaBPANoptosis

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.