Evidence map›Paper›PMID 39438783›Full record

ArticleBMC genomics2024

Genomic insight on Klebsiella variicola isolated from wastewater treatment plant has uncovered a novel bacteriophage.

Kgaugelo E Lekota, Refilwe O Mabeo, Tsepo Ramatla, Deidre A B Van Wyk, Oriel Thekisoe, Lesego G Molale-Tom, Cornelius C Bezuidenhout

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Genomic characterization ofMicrobiology spectrum · 2026
    Article
  2. Article
  3. Genomic characterisation and antimicrobial resistance ofFrontiers in cellular and infection microbiology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kgaugelo E LekotaUnit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa. Lekota.lekota@nwu.ac.za.
Refilwe O MabeoUnit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa.
Tsepo RamatlaUnit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa.
Deidre A B Van WykUnit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa.
Oriel ThekisoeUnit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa.
Lesego G Molale-TomUnit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa.
Cornelius C BezuidenhoutUnit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Klebsiella variicola is considered an emerging pathogen, which may colonize a variety of hosts, including environmental sources. Klebsiella variicola investigated in this study was obtained from an influent wastewater treatment plant in the North-West Province, South Africa. Whole genome sequencing was conducted to unravel the genetic diversity and antibiotic resistance patterns of K. variicola. Whole genome core SNP phylogeny was employed on publicly available 170 genomes. Furthermore, capsule types and antibiotic resistance genes, particularly beta-lactamase and carbapenems genes were investigated from the compared genomes. A 38 099 bp bacteriophage was uncovered alongside with K. variicola genome. Whole genome sequencing revealed that the extended beta-lactamase bla

Indexed as

BacteriophagesGenomicsKlebsiellaPhylogenyWastewaterbeta-LactamasesGenome, BacterialGenome, ViralWhole Genome Sequencingbeta-LactamasesWastewaterAntibiotic resistantBacteriophagesKlebsiella variicolaWhole genome sequencing

Identifiers

PMID39438783
PMCPMC11494819

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.