Evidence map›Paper›PMID 39438572›Full record

ArticleCommunications medicine2024

Advanced three-dimensional X-ray imaging unravels structural development of the human thymus compartments.

Savvas Savvidis, Roberta Ragazzini, Valeria Conde de Rafael, J Ciaran Hutchinson, Lorenzo Massimi, Fabio A Vittoria, Sara Campinoti, Tom Partridge, Olumide K Ogunbiyi, Alessia Atzeni and 6 more

Abstract read
In one paragraph

Article in Communications medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Basic interactions responsible for thymus function explain the convoluted medulla shape.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. From cortex to medulla: Navigating the thymic landscape of T cell education.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Savvas SavvidisDepartment of Medical Physics and Biomedical Engineering, University College London, London, WC1E 6BT, UK.
Roberta RagazziniEpithelial Stem Cell Biology & Regenerative Medicine laboratory, The Francis Crick Institute, London, NW1 1AT, UK.ORCID http://orcid.org/0000-0003-2186-293X
Valeria Conde de RafaelDepartment of Medical Physics and Biomedical Engineering, University College London, London, WC1E 6BT, UK.
J Ciaran HutchinsonDepartment of Histopathology, Great Ormond Street Hospital for Children NHS Foundation Trust, London, WC1N 1EH, UK.ORCID http://orcid.org/0000-0002-1708-2634
Lorenzo MassimiDepartment of Medical Physics and Biomedical Engineering, University College London, London, WC1E 6BT, UK.
Fabio A VittoriaDepartment of Medical Physics and Biomedical Engineering, University College London, London, WC1E 6BT, UK.
Sara CampinotiEpithelial Stem Cell Biology & Regenerative Medicine laboratory, The Francis Crick Institute, London, NW1 1AT, UK.ORCID http://orcid.org/0000-0003-0056-5792
Tom PartridgeDepartment of Medical Physics and Biomedical Engineering, University College London, London, WC1E 6BT, UK.
Olumide K OgunbiyiDepartment of Histopathology, Great Ormond Street Hospital for Children NHS Foundation Trust, London, WC1N 1EH, UK.
Alessia AtzeniCentre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, WC1E 6BT, UK.
Neil J SebireDepartment of Histopathology, Great Ormond Street Hospital for Children NHS Foundation Trust, London, WC1N 1EH, UK.
Paolo De CoppiStem Cell and Regenerative Medicine Section, Great Ormond Street Institute of Child Health, University College London, London, WC1N 1EH, UK.ORCID http://orcid.org/0000-0002-1659-0207
Alberto MittoneEuropean Synchrotron Radiation Facility, Grenoble, 38043, France.
Alberto BravinEuropean Synchrotron Radiation Facility, Grenoble, 38043, France.ORCID http://orcid.org/0000-0001-6868-2755
Paola BonfantiEpithelial Stem Cell Biology & Regenerative Medicine laboratory, The Francis Crick Institute, London, NW1 1AT, UK. paola.bonfanti@crick.ac.uk.ORCID http://orcid.org/0000-0001-9655-3766
Alessandro OlivoDepartment of Medical Physics and Biomedical Engineering, University College London, London, WC1E 6BT, UK. a.olivo@ucl.ac.uk.ORCID http://orcid.org/0000-0002-7150-2951

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 639429Innovate UK 10005465RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/T005408/1RCUK | Medical Research Council (MRC) MC_PC_17180Rosetrees Trust M553Royal Academy of Engineering CiET1819/2/78Wellcome Trust CC0102
6 · The paper itself

Abstract

backgroundThe thymus, responsible for T cell-mediated adaptive immune system, has a structural and functional complexity that is not yet fully understood. Until now, thymic anatomy has been studied using histological thin sections or confocal microscopy 3D reconstruction, necessarily for limited volumes.

methodsWe used Phase Contrast X-Ray Computed Tomography to address the lack of whole-organ volumetric information on the microarchitecture of its structural components. We scanned 15 human thymi (9 foetal and 6 postnatal) with synchrotron radiation, and repeated scans using a conventional laboratory x-ray system. We used histology, immunofluorescence and flow cytometry to validate the x-ray findings.

resultsApplication to human thymi at pre- and post-natal stages allowed reliable tracking and quantification of the evolution of parameters such as size and distribution of Hassall's Bodies and medulla-to-cortex ratio, whose changes reflect adaptation of thymic activity. We show that Hassall's bodies can occupy 25% of the medulla volume, indicating they should be considered a third thymic compartment with possible implications on their role. Moreover, we demonstrate compatible results can be obtained with standard laboratory-based x-ray equipment, making this research tool accessible to a wider community.

conclusionsOur study allows overcoming the resolution and/or volumetric limitations of existing approaches for the study of thymic disfunction in congenital and acquired disorders affecting the adaptive immune system.

Identifiers

PMID39438572
PMCPMC11496816

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.