ArticleGenome research2024
Binding profiles for 961
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In one paragraph
Article in Genome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
14 citing papers in PubMed.
- Translation of a small upstream open reading frame functions as a rheostat for the regulation ofbioRxiv : the preprint server for biology · 2026Article
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- Activity induced GEM-4/Copine expression inhibits gap junctions and promotes thermosensory plasticity.bioRxiv : the preprint server for biology · 2026Article
- MYRF drives heterochronic miRNAs and LIN-42, and amplifies oscillatory programs for stage transitions.bioRxiv : the preprint server for biology · 2026Article
- ATRX safeguards cellular identity duringbioRxiv : the preprint server for biology · 2026Article
- TF2TG: an online resource mining the potential gene targets of transcription factors in Drosophila.Genetics · 2026Article
- Radial-glia-to-astrocyte trans-differentiation and astrocyte transcriptional convergence are coordinated by CEH-43/DLX inbioRxiv : the preprint server for biology · 2026Article
- Article
- Video - Visual Integration of Drosophila Enhancer Organization: A tool for integrating and visualizing chromatin accessibility, in vivo transcription factor binding and motif occurrence in tissue-specific differentially expressed genes.bioRxiv : the preprint server for biology · 2025Article
- Article
- An updated compendium of Caenorhabditis elegans RNA-binding proteins and their regulation.G3 (Bethesda, Md.) · 2025Article
- Lineage-resolved analysis of embryonic gene expression evolution inScience (New York, N.Y.) · 2025Article
- CelEst: a unified gene regulatory network for estimating transcription factor activities in C. elegans.Genetics · 2025Article
- Neural Circuit Remodeling: Mechanistic Insights from Invertebrates.Journal of developmental biology · 2024Review
Corrections and comments
- Update of
Authors and funding
25 authors.
Michelle KudronDepartment of Genetics, Yale University, New Haven, Connecticut 06520, USA.
Louis GevirtzmanDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.
Alec VictorsenDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, Minnesota 55455, USA.
Bridget C LearDepartment of Neurobiology, Northwestern University, Evanston, Illinois 60208, USA.
Jiahao GaoProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06520, USA.
Jinrui XuDepartment of Biology, Howard University, Washington, District of Columbia 20059, USA.ORCID 0000-0003-1944-2821
Swapna SamantaDepartment of Genetics, Yale University, New Haven, Connecticut 06520, USA.
Emily FrinkDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.
Adri Tran-PearsonDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.
Chau HuynhDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.
Dionne VafeadosDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.
Ann HammondsDivision of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
William FisherDivision of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Martha WallInstitute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois 60637, USA.
Greg WesselingDepartment of Neurobiology, Northwestern University, Evanston, Illinois 60208, USA.
Vanessa HernandezDepartment of Neurobiology, Northwestern University, Evanston, Illinois 60208, USA.
Zhichun LinDepartment of Neurobiology, Northwestern University, Evanston, Illinois 60208, USA.
Mary KasparianDepartment of Neurobiology, Northwestern University, Evanston, Illinois 60208, USA.
Kevin WhiteDepartment of Biochemistry and Precision Medicine Translational Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, 117597 Singapore.
Ravi AlladaDepartment of Neurobiology, Northwestern University, Evanston, Illinois 60208, USA.
Mark GersteinProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06520, USA.
LaDeana HillierDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.
Susan E CelnikerDivision of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Valerie ReinkeDepartment of Genetics, Yale University, New Haven, Connecticut 06520, USA; watersto@uw.edu valerie.reinke@yale.edu.ORCID 0000-0002-8967-2756
Robert H WaterstonDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA; watersto@uw.edu valerie.reinke@yale.edu.
Funding
VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI CHIEN-MIN KAO · 1985 to 2026
$122.1MResource ProjectU41HG007355 · NHGRI · UNIVERSITY OF WASHINGTON · PI WATERSTON, ROBERT H · 2013 to 2021
$20.8MResource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5MEnhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5MPatterned Gene Expression in Drosophila DevelopmentR01GM076655 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CELNIKER, SUSAN E · 2006 to 2020
$6.8MHigh Performance Computing Instrumentation for the Yale Center for Genome AnalysisS10OD030363 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2022 to 2022
$1.2MNCI NIH HHS P30 CA014599NHGRI NIH HHS U41 HG007355NIGMS NIH HHS R01 GM076655NIH HHS P40 OD010440NIH HHS P40 OD018537NIH HHS S10 OD030363
Abstract
A catalog of transcription factor (TF) binding sites in the genome is critical for deciphering regulatory relationships. Here, we present the culmination of the efforts of the modENCODE (model organism Encyclopedia of DNA Elements) and modERN (model organism Encyclopedia of Regulatory Networks) consortia to systematically assay TF binding events in vivo in two major model organisms,
Indexed as
Caenorhabditis elegansDrosophila melanogasterTranscription FactorsAnimalsBinding SitesCaenorhabditis elegans ProteinsChromatinDrosophila ProteinsOrgan SpecificityProtein BindingCaenorhabditis elegans ProteinsChromatinDrosophila ProteinsTranscription Factors
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LicenceCC BY-NC
Read underepoch 390
Registered trials
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.