Evidence map›Paper›PMID 39436777›Full record

ArticlePlant biotechnology journal2025

Modification of xylan in secondary walls alters cell wall biosynthesis and wood formation programs and improves saccharification.

Pramod Sivan, János Urbancsok, Evgeniy N Donev, Marta Derba-Maceluch, Félix R Barbut, Zakiya Yassin, Madhavi L Gandla, Madhusree Mitra, Saara E Heinonen, Jan Šimura and 7 more

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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  5. Identification of thePlants (Basel, Switzerland) · 2025
    Article
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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Pramod Sivan *Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.ORCID https://orcid.org/0000-0001-5297-2221
János Urbancsok *Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.ORCID https://orcid.org/0000-0003-3237-6806
Evgeniy N DonevUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.ORCID https://orcid.org/0000-0002-7279-0481
Marta Derba-MaceluchUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.ORCID https://orcid.org/0000-0002-8034-3630
Félix R BarbutUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.ORCID https://orcid.org/0000-0001-5395-6776
Zakiya YassinRISE Research Institutes of Sweden, Stockholm, Sweden.ORCID https://orcid.org/0000-0001-6878-3361
Madhavi L GandlaDepartment of Chemistry, Umeå University, Umeå, Sweden.ORCID https://orcid.org/0000-0003-2798-6298
Madhusree MitraUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.ORCID https://orcid.org/0000-0002-8653-8770
Saara E HeinonenDivision of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, Stockholm, Sweden.ORCID https://orcid.org/0000-0002-5069-2370
Jan ŠimuraUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.ORCID https://orcid.org/0000-0002-1567-2278
Kateřina CermanováLaboratory of Growth Regulators, The Czech Academy of Sciences & Faculty of Science, Institute of Experimental Botany, Palacký University, Olomouc, Czechia.ORCID https://orcid.org/0009-0006-5809-0733
Michal KaradyLaboratory of Growth Regulators, The Czech Academy of Sciences & Faculty of Science, Institute of Experimental Botany, Palacký University, Olomouc, Czechia.ORCID https://orcid.org/0000-0002-5603-706X
Gerhard ScheepersRISE Research Institutes of Sweden, Stockholm, Sweden.ORCID https://orcid.org/0000-0002-5630-1377
Leif J JönssonDepartment of Chemistry, Umeå University, Umeå, Sweden.ORCID https://orcid.org/0000-0003-3866-0111
Emma R MasterDepartment of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Ontario, Canada.ORCID https://orcid.org/0000-0002-6837-9817
Francisco VilaplanaDivision of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, Stockholm, Sweden.ORCID https://orcid.org/0000-0003-3572-7798
Ewa J MellerowiczUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.ORCID https://orcid.org/0000-0001-6817-1031

Funding

Bio4EnergyGrantová Agentura České Republiky 20-25948YKempestiftelsernaKnut och Alice Wallenbergs StiftelseStiftelsen för Strategisk Forskning ValueTree RBP14-0011Trees for the FutureVetenskapsrådet 2020-04720VINNOVA
6 · The paper itself

Abstract

Wood of broad-leaf tree species is a valued source of renewable biomass for biorefinery and a target for genetic improvement efforts to reduce its recalcitrance. Glucuronoxylan (GX) plays a key role in recalcitrance through its interactions with cellulose and lignin. To reduce recalcitrance, we modified wood GX by expressing GH10 and GH11 endoxylanases from Aspergillus nidulans in hybrid aspen (Populus tremula L. × tremuloides Michx.) and targeting the enzymes to cell wall. The xylanases reduced tree height, modified cambial activity by increasing phloem and reducing xylem production, and reduced secondary wall deposition. Xylan molecular weight was decreased, and the spacing between acetyl and MeGlcA side chains was reduced in transgenic lines. The transgenic trees produced hypolignified xylem having thin secondary walls and deformed vessels. Glucose yields of enzymatic saccharification without pretreatment almost doubled indicating decreased recalcitrance. The transcriptomics, hormonomics and metabolomics data provided evidence for activation of cytokinin and ethylene signalling pathways, decrease in ABA levels, transcriptional suppression of lignification and a subset of secondary wall biosynthetic program, including xylan glucuronidation and acetylation machinery. Several candidate genes for perception of impairment in xylan integrity were detected. These candidates could provide a new target for uncoupling negative growth effects from reduced recalcitrance. In conclusion, our study supports the hypothesis that xylan modification generates intrinsic signals and evokes novel pathways regulating tree growth and secondary wall biosynthesis.

Indexed as

Aspergillus nidulansCell WallPopulusWoodXylansEndo-1,4-beta XylanasesPlant CellsSaccharinTreesEndo-1,4-beta XylanasesSaccharinXylansfungal xylanasesGlucuronoxylanlignocellulosesecondary cell walltransgenic aspenwood development

Identifiers

PMID39436777
PMCPMC11672743

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.