Evidence map›Paper›PMID 39436423›Full record

ArticleMicrobial ecology2024

Biofilm Formation on Excavation Damaged Zone Fractures in Deep Neogene Sedimentary Rock.

Akinari Hirota, Mariko Kouduka, Akari Fukuda, Kazuya Miyakawa, Keisuke Sakuma, Yusuke Ozaki, Eiichi Ishii, Yohey Suzuki

Abstract read
In one paragraph

Article in Microbial ecology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Akinari Hirota *Regulatory Standard and Research Department, Secretariat of Nuclear Regulation Authority (S/NRA/R), 1-9-9, Roppongi, Minato-Ku, Tokyo, 106-8450, Japan.
Mariko Kouduka *Department of Earth and Planetary Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-Ku, Tokyo, Japan.
Akari FukudaDepartment of Earth and Planetary Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-Ku, Tokyo, Japan.
Kazuya MiyakawaHoronobe Underground Research Center, Japan Atomic Energy Agency, 432-2 Hokushin, Horonobe-Cho, Hokkaido, 098-3224, Japan.
Keisuke SakumaNuclear Safety Research Center, Japan Atomic Energy Agency, 2-4 Shirakata, Tokai-Mura, Naka-Gun, Ibaraki, 319-1195, Japan.
Yusuke OzakiHoronobe Underground Research Center, Japan Atomic Energy Agency, 432-2 Hokushin, Horonobe-Cho, Hokkaido, 098-3224, Japan.
Eiichi IshiiNuclear Safety Research Center, Japan Atomic Energy Agency, 2-4 Shirakata, Tokai-Mura, Naka-Gun, Ibaraki, 319-1195, Japan.
Yohey SuzukiDepartment of Earth and Planetary Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-Ku, Tokyo, Japan. yohey-suzuki@eps.s.u-tokyo.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Deep underground galleries are used to access the deep biosphere in addition to mining and other engineering applications, such as geological disposal of radioactive waste. Fracture networks developed in the excavation damaged zone (EDZ) are concerned with accelerating mass transport, where microbial colonization might be possible due to the availability of space and nutrients. In this study, microbial biofilms at EDZ fractures were investigated by drilling from a 350-m-deep gallery and subsequent borehole logging at the Horonobe Underground Research Laboratory (URL). By using microscopic and spectroscopic techniques, the dense colonization of microbial cells was demonstrated at the surfaces of the EDZ fractures with high hydraulic conductivity. 16S rRNA gene sequence analysis revealed the dominance of gammaproteobacterial lineages, the cultivated members of which are aerobic methanotrophs. The near-complete genomes from Horonobe groundwater, affiliated with the methanotrophic lineages, were fully equipped with genes involved in aerobic methanotrophy. Although the mediation of aerobic methanotrophy remains to be demonstrated, microbial O

Indexed as

BiofilmsGeologic SedimentsRNA, Ribosomal, 16SBacteriaDNA, BacterialGammaproteobacteriaGroundwaterPhylogenyDNA, BacterialRNA, Ribosomal, 16SAerobic MethanotrophsBiofilm FormationDark O2Excavation Damaged ZoneRadioactive Waste Disposal

Identifiers

PMID39436423
PMCPMC11496357

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.