Evidence map›Paper›PMID 39433902›Full record

ArticleThe EMBO journal2024

PRC2-EZH1 contributes to circadian gene expression by orchestrating chromatin states and RNA polymerase II complex stability.

Peng Liu, Seba Nadeef, Maged F Serag, Andreu Paytuví-Gallart, Maram Abadi, Francesco Della Valle, Santiago Radío, Xènia Roda, Jaïr Dilmé Capó, Sabir Adroub and 12 more

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Co-expression network analysis reveals repression ofbioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Peng Liu *King Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, KAUST Environmental Epigenetics Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia. peng.liu@kaust.edu.sa.ORCID http://orcid.org/0000-0001-5490-7343
Seba Nadeef *King Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, KAUST Environmental Epigenetics Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia.ORCID http://orcid.org/0000-0001-8193-5251
Maged F SeragKing Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, Bioscience Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Andreu Paytuví-GallartSequentia Biotech SL, Carrer Comte D'Urgell 240, Barcelona, 08036, Spain.
Maram AbadiKing Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, Bioscience Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Francesco Della ValleKing Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, KAUST Environmental Epigenetics Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Santiago RadíoSequentia Biotech SL, Carrer Comte D'Urgell 240, Barcelona, 08036, Spain.
Xènia RodaSequentia Biotech SL, Carrer Comte D'Urgell 240, Barcelona, 08036, Spain.ORCID http://orcid.org/0009-0008-1484-2475
Jaïr Dilmé CapóSequentia Biotech SL, Carrer Comte D'Urgell 240, Barcelona, 08036, Spain.
Sabir AdroubKing Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, KAUST Environmental Epigenetics Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Nadine Hosny El SaidKing Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, KAUST Environmental Epigenetics Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia.ORCID http://orcid.org/0000-0002-4813-9824
Bodor FallatahKing Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, KAUST Environmental Epigenetics Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Mirko CeliiKing Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, KAUST Environmental Epigenetics Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Gian Marco MessaKing Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, KAUST Environmental Epigenetics Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Mengge WangKing Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, Bioscience Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Mo LiKing Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, Bioscience Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia.ORCID http://orcid.org/0000-0003-0827-8907
Paola TogniniUniversity of California, Irvine, Department of Biological Chemistry, School of Medicine, Center for Epigenetics and Metabolism, Irvine, CA, 92697, USA.ORCID http://orcid.org/0000-0001-7055-4701
Lorena Aguilar-ArnalUniversity of California, Irvine, Department of Biological Chemistry, School of Medicine, Center for Epigenetics and Metabolism, Irvine, CA, 92697, USA.ORCID http://orcid.org/0000-0003-4473-4471
Satoshi HabuchiKing Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, Bioscience Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Selma MasriUniversity of California Irvine, Department of Biological Chemistry, Chao Family Comprehensive Cancer Center, Irvine, CA, 92697, USA.
Paolo Sassone-Corsi *University of California, Irvine, Department of Biological Chemistry, School of Medicine, Center for Epigenetics and Metabolism, Irvine, CA, 92697, USA.
Valerio Orlando *King Abdullah University of Science and Technology, KAUST, Biological and Environmental Sciences and Engineering Division, KAUST Environmental Epigenetics Program, Thuwal, 23955-6900, Kingdom of Saudi Arabia. valerio.orlando@kaust.edu.sa.ORCID http://orcid.org/0000-0002-4906-8511

Funding

Circadian Clock and Myc-dependent Regulation of Cellular TransformationR01CA259370 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Selma Masri · 2022 to 2026
$3.0M
Circadian Clock Disruption and Colorectal CancerR01CA244519 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Selma Masri · 2020 to 2026
$3.0M
King Abdullah University of Science and Technology (KAUST) BAS/1/1028-01-01King Abdullah University of Science and Technology (KAUST) BAS/1/1037-01-01King Abdullah University of Science and Technology (KAUST) BAS/1/1080-01King Abdullah University of Science and Technology (KAUST) KAUST-UCI Strategic Research Joint Program "Epigenetics"King Abdullah University of Science and Technology (KAUST) URF/1/1042-01-01National Council of Humanities, Science and Technology (CONAHCyT) FORDECYT-PRONACES/15758/2020NCI NIH HHS R01 CA244519NCI NIH HHS R01 CA259370NextGenerationEU Italian Ministry of University and Research M4.C2 -PNRR YOUNG MSCA_0000081 iNsPIReDNIH HHS R01CA244519NIH HHS R01CA259370
6 · The paper itself

Abstract

Circadian rhythmicity of gene expression is a conserved feature of cell physiology. This involves fine-tuning between transcriptional and post-transcriptional mechanisms and strongly depends on the metabolic state of the cell. Together these processes guarantee an adaptive plasticity of tissue-specific genetic programs. However, it is unclear how the epigenome and RNA Pol II rhythmicity are integrated. Here we show that the PcG protein EZH1 has a gateway bridging function in postmitotic skeletal muscle cells. On the one hand, the circadian clock master regulator BMAL1 directly controls oscillatory behavior and periodic assembly of core components of the PRC2-EZH1 complex. On the other hand, EZH1 is essential for circadian gene expression at alternate Zeitgeber times, through stabilization of RNA Polymerase II preinitiation complexes, thereby controlling nascent transcription. Collectively, our data show that PRC2-EZH1 regulates circadian transcription both negatively and positively by modulating chromatin states and basal transcription complex stability.

Indexed as

ARNTL Transcription FactorsChromatinCircadian RhythmPolycomb Repressive Complex 2RNA Polymerase IIAnimalsGene Expression RegulationMiceTranscription, GeneticARNTL Transcription FactorsBmal1 protein, mouseChromatinEzh1 protein, mousePolycomb Repressive Complex 2RNA Polymerase IICircadian RhythmEZH1H3K27me3Transcription

Identifiers

PMID39433902
PMCPMC11612306

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.