Evidence map›Paper›PMID 39433609›Full record

ArticleWorld journal of microbiology & biotechnology2024

Global regulator AdpA directly binds to tunicamycin gene cluster and negatively regulates tunicamycin biosynthesis in Streptomyces clavuligerus.

Çiğdem Otur, Aslıhan Kurt-Kızıldoğan

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Article in World journal of microbiology & biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Overexpression of the Wbl family regulator whiDWorld journal of microbiology & biotechnology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Çiğdem OturDepartment of Agricultural Biotechnology, Ondokuz Mayıs University, Atakum, Samsun, 55139, Türkiye.ORCID https://orcid.org/0000-0002-9323-0993
Aslıhan Kurt-KızıldoğanDepartment of Agricultural Biotechnology, Ondokuz Mayıs University, Atakum, Samsun, 55139, Türkiye. aslihan.kizildogan@omu.edu.tr.ORCID https://orcid.org/0000-0003-3337-7990

Funding

Ondokuz Mayıs University Research Fund PYO. ZRT. 1904.21.008Türkiye Bilimsel ve Teknolojik Araştırma Kurumu 117Z808
6 · The paper itself

Abstract

Since a transcriptional regulator has yet to be identified within the tunicamycin biosynthetic gene cluster in Streptomyces clavuligerus, we conducted a comprehensive investigation by focusing on the possible function of the pleiotropic regulator AdpA on tunicamycin. The genes encoding early steps of tunicamycin biosynthesis were significantly upregulated in S. clavuligerus ΔadpA. At the same time, they were downregulated in adpA overexpressed strain as shown by RNA-sequencing (RNA-seq) and reverse transcriptase-quantitative polymerase chain reaction (RT-qPCR) analysis. The tunicamycin gene cluster's co-transcription pattern was understood by reverse transcriptase polymerase chain reaction (RT-PCR). Our Electrophoretic Mobility Shift Assay (EMSA) data clearly showed AdpA's binding to the upstream sequence of the tunA gene, asserting its regulatory control. In addition to its direct negative regulation of tunicamycin biosynthesis, AdpA operates at a global level by orchestrating various regulatory genes in S. clavuligerus, such as wblA, whiB, bldM, arpA, brp, and adsA involved in morphological differentiation and secondary metabolite biosynthesis as depicted in RNA-seq data. This study represents a significant milestone by unveiling the AdpA regulator's pathway-specific and global regulatory effect in S. clavuligerus.

Indexed as

Bacterial ProteinsGene Expression Regulation, BacterialMultigene FamilyStreptomycesTunicamycinAnti-Bacterial AgentsPromoter Regions, GeneticTranscription FactorsAnti-Bacterial AgentsBacterial ProteinsTranscription FactorsTunicamycinAdpAGel shift mobilityRepressorTranscriptomeTunicamycin

Identifiers

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.