Evidence map›Paper›PMID 39429882›Full record

ArticleiMeta2024

ImageGP 2 for enhanced data visualization and reproducible analysis in biomedical research.

Tong Chen, Yong-Xin Liu, Tao Chen, Mei Yang, Siqing Fan, Minglei Shi, Buqing Wei, Huijiao Lv, Wandi Cao, Chongming Wang and 6 more

Abstract read
In one paragraph

Article in iMeta, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Article
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  5. Genome-Wide Characterization of thePlants (Basel, Switzerland) · 2026
    Article
  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Tong ChenState Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica China Academy of Chinese Medical Sciences Beijing China.
Yong-Xin LiuGenome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen Chinese Academy of Agricultural Sciences Shenzhen China.ORCID 0000-0003-1832-9835
Tao ChenNorthwest Institute of Plateau Biology Chinese Academy of Sciences Xining Qinghai China.
Mei YangState Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica China Academy of Chinese Medical Sciences Beijing China.ORCID 0009-0008-8075-1010
Siqing FanLushan Botanical Garden Chinese Academy of Sciences Jiujiang China.
Minglei ShiSchool of Life Course and Population Sciences King's College London London UK.
Buqing WeiState Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, The Institute of Agricultural Resources and Regional Planning Chinese Academy of Agricultural Sciences Beijing China.ORCID 0009-0009-9929-6959
Huijiao LvKey Laboratory of Human Disease Comparative Medicine, National Health Commission of China (NHC), Institute of Laboratory Animal Science, Chinese Academy of Medical Sciences Peking Union Medicine College Beijing China.
Wandi CaoNanjing Agricultural University Nanjing China.
Chongming WangCollege of Resources and Environment Huazhong Agricultural University Wuhan Hubei China.
Jianzhou CuiImmunology Translational Research Program, Yong Loo Lin School of Medicine National University of Singapore Singapore Singapore.
Jiwen ZhaoState Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Agronomy Northwest A&F University Yangling Shaanxi People's Republic of China.
Yilai HanDepartment of Neurology, National Center for Neurological Disorders Xuanwu Hospital Capital Medical University Beijing China.
Jiao XiCollege of Natural Resources and Environment Northwest A&F University Yangling Shaanxi China.ORCID 0000-0001-5428-7391
Ziqiang ZhengSchool of Life Science and Technology Wuhan Polytechnic University Wuhan China.
Luqi HuangState Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica China Academy of Chinese Medical Sciences Beijing China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ImageGP is an extensively utilized, open-access platform for online data visualization and analysis. Over the past 7 years, it has catered to more than 700,000 usages globally, garnering substantial user feedback. The updated version, ImageGP 2 (available at https://www.bic.ac.cn/BIC), introduces a redesigned interface leveraging cutting-edge web technologies to enhance functionality and user interaction. Key enhancements include the following: (i) Addition of modules for data format transformation, facilitating operations such as matrix merging, subsetting, and transformation between long and wide formats. (ii) Streamlined workflows with features like preparameter selection data validation and grouping of parameters with similar attributes. (iii) Expanded repertoire of visualization functions and analysis tools, including Weighted Gene Co-Expression Network Analysis, differential gene expression analysis, and FASTA sequence processing. (iv) Personalized user space for uploading large data sets, tracking analysis history, and sharing reproducible analysis data, scripts, and results. (v) Enhanced user support through a simplified error debugging feature accessible with a single click. (vi) Introduction of an R package, ImageGP, enabling local data visualization and analysis. These updates position ImageGP 2 as a versatile tool serving both wet-lab and dry-lab researchers with expanded capabilities.

Indexed as

biology cloud platformdata analysisdata transformationdata visualizationImageGP

Identifiers

PMID39429882
PMCPMC11487545

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.