Evidence map›Paper›PMID 39429195›Full record

ArticleRNA biology2024

Identification and functional characterization of lncRNAs involved in human monocyte-to-macrophage differentiation.

Christy Montano, Sergio Covarrubias, Eric Malekos, Sol Katzman, Susan Carpenter

Abstract read
In one paragraph

Article in RNA biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Peripheral bloodStroke and vascular neurology · 2025
    Article
  2. CRISPRi Screen Identifies a Novel Growth Suppressor lncRNA,bioRxiv : the preprint server for biology · 2025
    Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Christy MontanoDepartment of Molecular, Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, CA, USA.
Sergio CovarrubiasDepartment of Molecular, Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, CA, USA.
Eric MalekosDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.
Sol KatzmanDepartment of Molecular, Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, CA, USA.
Susan CarpenterDepartment of Molecular, Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, CA, USA.ORCID 0000-0002-5600-5404

Funding

High throughput functional characterization of lncRNAs in macrophage biologyR35GM137801 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI CARPENTER, SUSAN · 2020 to 2024
$2.2M
Identification and characterization of small open reading frames translated during inflammationF31AI179201 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI MALEKOS, ERIC · 2023 to 2025
$134k
NIAID NIH HHS F31 AI179201NIGMS NIH HHS R35 GM137801
6 · The paper itself

Abstract

Although long noncoding RNAs (lncRNAs) constitute the majority of the human transcriptome, the functional roles of most remain elusive. While protein-coding genes in macrophage biology have been extensively studied, the contribution of lncRNAs in this context is poorly understood. Given the vast number of lncRNAs (>20,000), identifying candidates for functional characterization poses a significant challenge. Here, we present two complementary approaches to pinpoint and investigate lncRNAs involved in monocyte-to-macrophage differentiation: RNA-seq for functional inference and a high-throughput functional screen. These strategies enabled us to identify four lncRNA regulators of monocyte differentiation:

Indexed as

Cell DifferentiationMacrophagesMonocytesRNA, Long NoncodingGene Expression ProfilingGene Expression RegulationHumansTranscriptomeRNA, Long NoncodingCRISPR screeningdifferentiationLong noncoding RNAsmacrophagemonocyte

Identifiers

PMID39429195
PMCPMC11497951

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.