Evidence map›Paper›PMID 39428257›Full record

ArticleFEBS open bio2025

Revealing protein structures: crystallization of protein-ligand complexes - co-crystallization and crystal soaking.

Barbora Kaščáková, Anna Koutská, Michaela Burdová, Petra Havlíčková, Ivana Kutá Smatanová

Abstract read
In one paragraph

Article in FEBS open bio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Other Techniques.Advances in biochemical engineering/biotechnology · 2026
    Review
  4. Automated gradient equilibration of macromolecular crystals to new solution conditions.Acta crystallographica. Section F, Structural biology communications · 2025
    Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Barbora KaščákováDepartment of Chemistry, Faculty of Science, University of South Bohemia in České Budějovice, Czech Republic.ORCID https://orcid.org/0000-0003-2709-4142
Anna KoutskáDepartment of Chemistry, Faculty of Science, University of South Bohemia in České Budějovice, Czech Republic.ORCID https://orcid.org/0009-0006-7071-1045
Michaela BurdováDepartment of Chemistry, Faculty of Science, University of South Bohemia in České Budějovice, Czech Republic.
Petra HavlíčkováDepartment of Chemistry, Faculty of Science, University of South Bohemia in České Budějovice, Czech Republic.ORCID https://orcid.org/0000-0001-7622-3129
Ivana Kutá SmatanováDepartment of Chemistry, Faculty of Science, University of South Bohemia in České Budějovice, Czech Republic.ORCID https://orcid.org/0000-0002-1337-9481

Funding

Federation of European Biochemical Societies PC24-047HORIZON EUROPE Research Infrastructures 101137229
6 · The paper itself

Abstract

Protein crystallogenesis represents a key step in X-ray crystallography studies that employ co-crystallization and ligand soaking for investigating ligand binding to proteins. Co-crystallization is a method that enables the precise determination of binding positions, although it necessitates a significant degree of optimization. The utilization of microseeding can facilitate a reduction in sample requirements and accelerate the co-crystallization process. Ligand soaking is the preferred method due to its simplicity; however, it requires careful control of soaking conditions to ensure the successful integration of the ligands. This research protocol details the procedures for co-crystallization and soaking to achieve protein-ligand complex formation, which is essential for advancing drug discovery. Additionally, a simple protocol for demonstrating soaking for educational purposes is described.

Indexed as

ProteinsCrystallizationCrystallography, X-RayLigandsProtein BindingProtein ConformationLigandsProteinsadvanced crystallizationco‐crystallizationcrystallization protocolcrystal soakingmicroseeding

Identifiers

PMID39428257
PMCPMC11961386

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.