Evidence map›Paper›PMID 39427232›Full record

ArticleHGG advances2025

HCV- and HBV-mediated liver cancer converge on similar transcriptomic landscapes and immune profiles.

Elizabeth S Borden, Annika Jorgensen, Heini M Natri, Karen Taraszka Hastings, Kenneth H Buetow, Melissa A Wilson

Abstract read
In one paragraph

Article in HGG advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Evolutionary View of Liver Pathology.Evolutionary applications · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Elizabeth S BordenDepartment of Dermatology, College of Medicine-Phoenix, University of Arizona, Phoenix, AZ, USA; Phoenix Veterans Affairs Health Care System, Phoenix, AZ, USA.
Annika JorgensenSchool of Life Sciences, Arizona State University, Tempe, AZ, USA.
Heini M NatriTranslational Genomics Research Institute, Phoenix, AZ, USA.
Karen Taraszka HastingsDepartment of Dermatology, College of Medicine-Phoenix, University of Arizona, Phoenix, AZ, USA; Phoenix Veterans Affairs Health Care System, Phoenix, AZ, USA.
Kenneth H BuetowSchool of Life Sciences, Arizona State University, Tempe, AZ, USA; Center for Evolution and Medicine, Arizona State University, Tempe, AZ, USA. Electronic address: kbuetow@asu.edu.
Melissa A WilsonSchool of Life Sciences, Arizona State University, Tempe, AZ, USA; Center for Evolution and Medicine, Arizona State University, Tempe, AZ, USA. Electronic address: mwilsons@asu.edu.

Funding

Population dynamics and medical consequences of sex chromosome evolutionR35GM124827 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI WILSON, MELISSA A · 2017 to 2024
$2.7M
Immunoediting in Cutaneous Squamous Cell CarcinomaF30CA281056 · NCI · UNIVERSITY OF ARIZONA · PI Elizabeth Borden · 2023 to 2026
$199k
NCI NIH HHS F30 CA281056NIGMS NIH HHS R35 GM124827
6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) remains a leading cause of cancer-related deaths worldwide, and a large proportion is attributable to viral causes, including hepatitis B (HBV) and C viruses (HCV). The pathogenesis of viral-mediated HCC can differ between HBV and HCV, but it is unclear how much these differences influence the tumors' final molecular and immune profiles. Additionally, there are known sex differences in the molecular etiology of HCC, but sex differences have not been explored in the context of viral-mediated HCC. To determine the extent to which the viral status and sex impact the molecular and immune profiles of HCC, we performed differential expression and immune cell deconvolution analyses. We identified a large number of differentially expressed genes unique to the HBV or HCV tumor:tumor-adjacent comparison. Pathway enrichment analyses demonstrated that changes unique to the HCV tumor:tumor-adjacent tissue were dominated by changes in immune pathways. Immune cell deconvolution demonstrated that HCV tumor-adjacent tissue had the largest immune cell infiltrate, with no difference in the immune profiles within HBV and HCV tumor samples. Overall, this work demonstrates the convergence of HBV- and HCV-mediated HCC on a similar transcriptomic landscape and immune profile despite differences in the surrounding tissue.

Indexed as

Carcinoma, HepatocellularHepacivirusHepatitis BHepatitis B virusHepatitis CLiver NeoplasmsTranscriptomeFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMalegene expression profilinghepatitishepatocellular carcinomaimmune infiltrationimmune systemliver cancersex differencestranscriptomics

Identifiers

PMID39427232
PMCPMC11570839

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.