Evidence map›Paper›PMID 39426342›Full record

ArticleComputerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society2024

An anthropomorphic diagnosis system of pulmonary nodules using weak annotation-based deep learning.

Lipeng Xie, Yongrui Xu, Mingfeng Zheng, Yundi Chen, Min Sun, Michael A Archer, Wenjun Mao, Yubing Tong, Yuan Wan

Abstract read
In one paragraph

Article in Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Lipeng XieSchool of Cyber Science and Engineering, Zhengzhou University, Zhengzhou, China.
Yongrui XuDepartment of Cardio-thoracic Surgery, Nanjing Medical University Affiliated Wuxi People's Hospital, Wuxi, Jiangsu, China; Nanjing Medical University, Nanjing, Jiangsu, China.
Mingfeng ZhengDepartment of Cardio-thoracic Surgery, Nanjing Medical University Affiliated Wuxi People's Hospital, Wuxi, Jiangsu, China; Nanjing Medical University, Nanjing, Jiangsu, China.
Yundi ChenDepartment of Biomedical Engineering, Binghamton University, Binghamton, NY, USA.
Min SunDivision of Oncology, University of Pittsburgh Medical Center Hillman Cancer Center at St. Margaret, Pittsburgh, PA, USA.
Michael A ArcherDivision of Thoracic Surgery, SUNY Upstate Medical University, USA.
Wenjun MaoDepartment of Cardio-thoracic Surgery, Nanjing Medical University Affiliated Wuxi People's Hospital, Wuxi, Jiangsu, China; Nanjing Medical University, Nanjing, Jiangsu, China. Electronic address: maowenjun1@njmu.edu.cn.
Yubing TongMedical Image Processing Group, Department of Radiology, University of Pennsylvania, 602 Goddard building, 3710 Hamilton Walk, Philadelphia, PA 19104, USA. Electronic address: yubing@pennmedicine.upenn.edu.
Yuan WanDepartment of Biomedical Engineering, Binghamton University, Binghamton, NY, USA. Electronic address: ywan@binghamton.edu.

Funding

Liquid biopsy of solitary pulmonary nodule with extracellular vesiclesR37CA255948 · NCI · STATE UNIVERSITY OF NY,BINGHAMTON · PI Yuan Wan · 2021 to 2026
$3.0M
Lipid nanoprobe integrated microdevice for extracellular vesicle isolation and duplex sequencing based mutation detection for non-invasive lung cancer diagnosisR01CA230339 · NCI · PENNSYLVANIA STATE UNIVERSITY, THE · PI ZHENG, SIYANG · 2018 to 2023
$1.9M
NCI NIH HHS R01 CA230339NCI NIH HHS R37 CA255948
6 · The paper itself

Abstract

The accurate categorization of lung nodules in CT scans is an essential aspect in the prompt detection and diagnosis of lung cancer. The categorization of grade and texture for nodules is particularly significant since it can aid radiologists and clinicians to make better-informed decisions concerning the management of nodules. However, currently existing nodule classification techniques have a singular function of nodule classification and rely on an extensive amount of high-quality annotation data, which does not meet the requirements of clinical practice. To address this issue, we develop an anthropomorphic diagnosis system of pulmonary nodules (PN) based on deep learning (DL) that is trained by weak annotation data and has comparable performance to full-annotation based diagnosis systems. The proposed system uses DL models to classify PNs (benign vs. malignant) with weak annotations, which eliminates the need for time-consuming and labor-intensive manual annotations of PNs. Moreover, the PN classification networks, augmented with handcrafted shape features acquired through the ball-scale transform technique, demonstrate capability to differentiate PNs with diverse labels, including pure ground-glass opacities, part-solid nodules, and solid nodules. Through 5-fold cross-validation on two datasets, the system achieved the following results: (1) an Area Under Curve (AUC) of 0.938 for PN localization and an AUC of 0.912 for PN differential diagnosis on the LIDC-IDRI dataset of 814 testing cases, (2) an AUC of 0.943 for PN localization and an AUC of 0.815 for PN differential diagnosis on the in-house dataset of 822 testing cases. In summary, our system demonstrates efficient localization and differential diagnosis of PNs in a resource limited environment, and thus could be translated into clinical use in the future.

Indexed as

Deep LearningLung NeoplasmsSolitary Pulmonary NoduleTomography, X-Ray ComputedDiagnosis, DifferentialHumansRadiographic Image Interpretation, Computer-AssistedClassificationDetectionPulmonary nodulesWeak annotation

Identifiers

PMID39426342
PMCPMC11620937

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.