Evidence map›Paper›PMID 39425025›Full record

ArticleBMC cardiovascular disorders2024

Exploring the predictive values of SERP4 and FRZB in dilated cardiomyopathy based on an integrated analysis.

Bin Qi, Hai-Yan Wang, Xiao Ma, Yu-Feng Chi, Chun Gui

Abstract read
In one paragraph

Article in BMC cardiovascular disorders, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Bin QiDepartment of Cardiology, First Affiliated Hospital, Guangxi Medical University, 6 Shuangyong Road, Nanning, Guangxi, 530021, China.
Hai-Yan WangDepartment of Cardiology, First Affiliated Hospital, Guangxi Medical University, 6 Shuangyong Road, Nanning, Guangxi, 530021, China.
Xiao MaDepartment of Cardiology, First Affiliated Hospital, Guangxi Medical University, 6 Shuangyong Road, Nanning, Guangxi, 530021, China.
Yu-Feng ChiDepartment of Cardiology, First Affiliated Hospital, Guangxi Medical University, 6 Shuangyong Road, Nanning, Guangxi, 530021, China.
Chun GuiDepartment of Cardiology, First Affiliated Hospital, Guangxi Medical University, 6 Shuangyong Road, Nanning, Guangxi, 530021, China. guichun@yahoo.com.

Funding

the Guangxi Natural Science Foundation 2020GXNSFDA297014the Innovative Research Team Project of Guangxi Natural Science Foundation 2018GXNSFGA281006
6 · The paper itself

Abstract

BACKGROUND AND

objectiveThe aim of this study was to investigate potential hub genes for dilated cardiomyopathy (DCM).

methodsFive DCM-related microarray datasets were downloaded from the Gene Expression Omnibus (GEO). Differentially expressed genes (DEGs) were used for identification. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment, disease ontology, gene ontology annotation and protein-protein interaction (PPI) network analysis were then performed, while a random forest was constructed to explore central genes. Artificial neural networks were used to compare with known genes and to develop new diagnostic models. 240 population blood samples were collected and expression of hub genes was verified in these samples using RT-PCR and demonstrated by Nomogram.

resultsAfter differential analysis, 33 genes were statistically significant (adjusted P < 0.05). Functional enrichment of these differential genes resulted in 85 Gene Ontology (GO) functions identified and 6 pathways enriched for the KEGG pathway. PPI networks and molecular complex assays identified 10 hub genes (adjusted P < 0.05). Random forest identified SMOC2 and SFRP4 as the most important, followed by FCER1G and FRZB. NeuraHF models (SMOC2, SFRP4, FCER1G and FRZB) were selected by artificial neural network model and had better diagnostic efficacy for the onset of DCM, compared with the traditional KG-DCM models (MYH7, ACTC1, TTN and LMNA). Finally, SFRP4 and FRZB were expressed higher in DCM verified by RT-PCR and as a factor for DCM identified by Nomogram.

conclusionsWe performed an integrated analysis and identified SFRP4 and FRZB as a new factor for DCM. But the exact mechanism still needs further experimental verification.

Indexed as

Cardiomyopathy, DilatedDatabases, GeneticGene Expression ProfilingGene Regulatory NetworksIntracellular Signaling Peptides and ProteinsPredictive Value of TestsProtein Interaction MapsProto-Oncogene ProteinsCase-Control StudiesComputational BiologyFemaleFrizzled-Related ProteinsGenetic MarkersGenetic Predisposition to DiseaseHumansMaleFrizzled-Related ProteinsGenetic MarkersIntracellular Signaling Peptides and ProteinsProto-Oncogene ProteinsSecreted Frizzled-Related ProteinsSFRP4 protein, humanArtificial neural networkDilated cardiomyopathyGEO analysisRandom forest

Identifiers

PMID39425025
PMCPMC11487873

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.