Evidence map›Paper›PMID 39425019›Full record

ReviewBMC medical imaging2024

Segmentation of choroidal area in optical coherence tomography images using a transfer learning-based conventional neural network: a focus on diabetic retinopathy and a literature review.

Jamshid Saeidian, Hossein Azimi, Zohre Azimi, Parnia Pouya, Hassan Asadigandomani, Hamid Riazi-Esfahani, Alireza Hayati, Kimia Daneshvar, Elias Khalili Pour

Abstract readReview
In one paragraph

Review in BMC medical imaging, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jamshid SaeidianFaculty of Mathematical Sciences and Computer, Kharazmi University, No. 50, Taleghani Avenue, Tehran, Iran.
Hossein AzimiFaculty of Mathematical Sciences and Computer, Kharazmi University, No. 50, Taleghani Avenue, Tehran, Iran.
Zohre AzimiDepartment of Mathematics, Faculty of Science, Arak University, Arak, Iran.
Parnia PouyaStudent Research Committee, Tabriz University of Medical Sciences, Tabriz, Iran.
Hassan AsadigandomaniRetina Service, Farabi Eye Hospital, Tehran University of Medical Sciences, South Kargar Street, Qazvin Square, Qazvin Street, Tehran, Iran.
Hamid Riazi-EsfahaniRetina Service, Farabi Eye Hospital, Tehran University of Medical Sciences, South Kargar Street, Qazvin Square, Qazvin Street, Tehran, Iran.
Alireza HayatiStudents' Research Committee (SRC), Qazvin University of Medical Sciences, Qazvin, Iran.
Kimia DaneshvarRetina Service, Farabi Eye Hospital, Tehran University of Medical Sciences, South Kargar Street, Qazvin Square, Qazvin Street, Tehran, Iran.
Elias Khalili PourRetina Service, Farabi Eye Hospital, Tehran University of Medical Sciences, South Kargar Street, Qazvin Square, Qazvin Street, Tehran, Iran. ekhalilipour@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThis study aimed to evaluate the effectiveness of DeepLabv3+with Squeeze-and-Excitation (DeepLabv3+SE) architectures for segmenting the choroid in optical coherence tomography (OCT) images of patients with diabetic retinopathy.

methodsA total of 300 B-scans were selected from 21 patients with mild to moderate diabetic retinopathy. Six DeepLabv3+SE variants, each utilizing a different pre-trained convolutional neural network (CNN) for feature extraction, were compared. Segmentation performance was assessed using the Jaccard index, Dice score (DSC), precision, recall, and F1-score. Binarization and Bland-Altman analysis were employed to evaluate the agreement between automated and manual measurements of choroidal area, luminal area (LA), and Choroidal Vascularity Index (CVI).

resultsDeepLabv3+SE with EfficientNetB0 achieved the highest segmentation performance, with a Jaccard index of 95.47, DSC of 98.29, precision of 98.80, recall of 97.41, and F1-score of 98.10 on the validation set. Bland-Altman analysis indicated good agreement between automated and manual measurements of LA and CVI.

conclusionsDeepLabv3+SE with EfficientNetB0 demonstrates promise for accurate choroid segmentation in OCT images. This approach offers a potential solution for automated CVI calculation in diabetic retinopathy patients. Further evaluation of the proposed method on a larger and more diverse dataset can strengthen its generalizability and clinical applicability.

Indexed as

ChoroidDiabetic RetinopathyNeural Networks, ComputerTomography, Optical CoherenceDeep LearningHumansChoroidal vascular indexChoroid segmentationConvolutional neural networkOptical coherence tomographyTransfer learning

Identifiers

PMID39425019
PMCPMC11488256

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.