Evidence map›Paper›PMID 39424630›Full record

ArticleArchives of virology2024

Molecular characterization of a novel mycotombus‑like virus isolated from the phytopathogenic fungus Nigrospora oryzae.

Zhijuan Yang, Mingliang Fei, Guicheng Wu, Yansuobao Xiang, Jie Zhong, Jia En Su, Yi Chen

Abstract read
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In one paragraph

Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zhijuan Yang *Dali Tobacco Company of Yunnan Province, Dali City, 671000, Yunnan Province, P.R. China.
Mingliang Fei *Yunnan Academy of Tobacco Agricultural Sciences, Kunming City, 650021, Yunnan Province, P.R. China.
Guicheng WuYunnan Aromatic Tobacco Company, Baoshan City, 678000, Yunnan Province, P.R. China.
Yansuobao XiangYunnan Aromatic Tobacco Company, Baoshan City, 678000, Yunnan Province, P.R. China.
Jie ZhongHunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Nongda Road 1, Furong District, Changsha City, 410128, Hunan Province, P.R. China.ORCID http://orcid.org/0000-0003-3614-5773
Jia En SuDali Tobacco Company of Yunnan Province, Dali City, 671000, Yunnan Province, P.R. China. dlyc8816@163.com.
Yi ChenYunnan Academy of Tobacco Agricultural Sciences, Kunming City, 650021, Yunnan Province, P.R. China. cytobacco007@sina.com.

Funding

Science and Technology Project of China National Tobacco Corporation Grant 110202102007the national natural science foundation regional fund project 32060630Tobacco Agricultural Science and Technology Innovation Project of Dali, Yunnan Province in 2022 DLYC2022003Yunnan Applied Fundamental Research Projects 202305AD160036
6 · The paper itself

Abstract

In this study, we identified a new mycotombus-like mycovirus from the phytopathogenic fungus Nigrospora oryzae, which was tentatively designated as "Nigrospora oryzae umbra-like virus 1" (NoULV1). The complete genome of NoULV1 is 3,381 nt long, containing two open reading frames (ORF1 and ORF2). ORF1 encodes a hypothetical protein with an unknown function, while ORF2 encodes an RNA-dependent RNA polymerase (RdRp) with a conserved RdRp domain containing a metal-binding 'GDN' triplet in motif C, which is distinct from the 'GDD' motif found in most + ssRNA mycoviruses. A homology search revealed that the RdRp encoded by ORF2 was similar to the RdRp of umbra-like mycoviruses. Phylogenetic analysis based on the RdRp indicated that NoULV1 was grouped into a clade together with umbra-like mycoviruses belonging to the proposed family "Mycotombusviridae".

Indexed as

AscomycotaFungal VirusesGenome, ViralOpen Reading FramesPhylogenyRNA-Dependent RNA PolymeraseViral ProteinsAmino Acid SequencePlant DiseasesRNA, ViralRNA VirusesRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.